Uses of Interface
info.bioinfweb.jphyloio.formats.nexus.NexusConstants

Packages that use NexusConstants

Package	Description
info.bioinfweb.jphyloio.formats.nexus	Contains classes for reading from and writing to streams/files in Nexus format.
info.bioinfweb.jphyloio.formats.nexus.blockhandlers	Contains implementations of NexusCommandEventReader for commands that are valid in all Nexus blocks.
info.bioinfweb.jphyloio.formats.nexus.commandreaders	Contains general classes for reading Nexus commands.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.all	Contains implementations of NexusCommandEventReader for commands that are valid in all Nexus blocks.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.characters	Contains classes for reading Nexus commands in a CHARACTERS, UNALIGNED or DATA block.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets	Contains classes for reading Nexus commands in a SETS block.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa	Contains classes for reading Nexus commands in a TAXA block.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees	Contains classes for reading Nexus commands in a TREES block.
info.bioinfweb.jphyloio.formats.nexus.receivers	Contains implementations of JPhyloIOEventReceiver used internally by NexusEventReader.

Uses of NexusConstants in info.bioinfweb.jphyloio.formats.nexus

Classes in info.bioinfweb.jphyloio.formats.nexus that implement NexusConstants

Modifier and Type	Class and Description
class	AbstractNexusSetWriter Customizable implementation for writing different kinds of Nexus sets.
class	NexusEventReader Event based reader for Nexus files.
class	NexusEventWriter Event based writer for the Nexus format.
class	NexusFactory Reader and writer factory for the Nexus format.
class	NexusReaderStreamDataProvider Stores data that shall be shared among different implementations of NexusCommandEventReader reading from the same document.

Uses of NexusConstants in info.bioinfweb.jphyloio.formats.nexus.blockhandlers

Classes in info.bioinfweb.jphyloio.formats.nexus.blockhandlers that implement NexusConstants

Modifier and Type	Class and Description
class	CharactersDataUnalignedBlockHandler A Nexus block handler to read sequence data from the CHARACTERS, DATA or UNALIGNED blocks.
class	ENewickNetworksBlockHandler A Nexus block handler to read phylogenetic networks from a NETWORK block containing network definitions in the eNewick format.
class	TaxaBlockHandler
class	TreesBlockHandler

Uses of NexusConstants in info.bioinfweb.jphyloio.formats.nexus.commandreaders

Classes in info.bioinfweb.jphyloio.formats.nexus.commandreaders that implement NexusConstants

Modifier and Type	Class and Description
class	AbstractKeyValueCommandReader
class	DefaultCommandReader Default Nexus command reader for all unsupported Nexus commands.

Uses of NexusConstants in info.bioinfweb.jphyloio.formats.nexus.commandreaders.all

Classes in info.bioinfweb.jphyloio.formats.nexus.commandreaders.all that implement NexusConstants

Modifier and Type	Class and Description
class	LinkReader Reads the LINK command of a Nexus block and stores the links in the shared information map of the stream data provider under the key NexusReaderStreamDataProvider.INFO_KEY_BLOCK_LINKS.
class	TitleReader Reads the TITLE command of a Nexus block and stores the title in the shared information map of the stream data provider under the key NexusReaderStreamDataProvider.INFO_KEY_BLOCK_TITLE.

Uses of NexusConstants in info.bioinfweb.jphyloio.formats.nexus.commandreaders.characters

Classes in info.bioinfweb.jphyloio.formats.nexus.commandreaders.characters that implement NexusConstants

Modifier and Type	Class and Description
class	AbstractCharLabelsReader Implements shared functionality for Nexus command readers that process character (alignment column) definitions.
class	CharLabelsReader Nexus reader for the CHARLABELS command that produces CharacterDefinitionEvents.
class	CharStateLabelsReader Nexus reader for the CHARSTATELABELS command that produces CharacterDefinitionEvents.
class	DimensionsReader
class	FormatReader Parser for the Format command in a Characters, Unaligned or Data block.
class	MatrixReader Parser for the MATRIX command in a CHARACTERS, UNALIGNED or DATA block.

Uses of NexusConstants in info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets

Classes in info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets that implement NexusConstants

Modifier and Type	Class and Description
class	AbstractNexusSetReader General reader implementation to read the Nexus commands that define different kinds of sets.
class	CharSetReader Parser for the CHARSET command in the SETS block.
class	IDBasedSetsReader Base class for all Nexus readers that create set event streams that consist of SetElementEvents.
class	TaxSetReader
class	TreeSetReader

Uses of NexusConstants in info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa

Classes in info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa that implement NexusConstants

Modifier and Type	Class and Description
class	TaxLabelsReader

Uses of NexusConstants in info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees

Classes in info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees that implement NexusConstants

Modifier and Type	Class and Description
class	ENewickNetworkReader Nexus command reader for the custom NETWORK command.
class	NexusNewickReaderNodeLabelProcessor
class	TranslateReader
class	TreeReader

Uses of NexusConstants in info.bioinfweb.jphyloio.formats.nexus.receivers

Classes in info.bioinfweb.jphyloio.formats.nexus.receivers that implement NexusConstants

Modifier and Type	Class and Description
class	AbstractNexusEventReceiver Implements basic functionality for event receivers writing Nexus.
class	AbstractNexusSetsEventReceiver General implementation for event receivers writing Nexus set commands.
class	CharacterSetEventReceiver
class	ReferenceOnlySetReceiver
class	TokenSetEventReceiver