Uses of Interface
info.bioinfweb.jphyloio.formats.nexus.commandreaders.NexusCommandEventReader

Packages that use NexusCommandEventReader

Package	Description
info.bioinfweb.jphyloio.formats.nexus.blockhandlers	Contains implementations of NexusCommandEventReader for commands that are valid in all Nexus blocks.
info.bioinfweb.jphyloio.formats.nexus.commandreaders	Contains general classes for reading Nexus commands.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.all	Contains implementations of NexusCommandEventReader for commands that are valid in all Nexus blocks.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.characters	Contains classes for reading Nexus commands in a CHARACTERS, UNALIGNED or DATA block.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets	Contains classes for reading Nexus commands in a SETS block.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa	Contains classes for reading Nexus commands in a TAXA block.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees	Contains classes for reading Nexus commands in a TREES block.

Uses of NexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.blockhandlers

Methods in info.bioinfweb.jphyloio.formats.nexus.blockhandlers with parameters of type NexusCommandEventReader

Modifier and Type	Method and Description
void	CharactersDataUnalignedBlockHandler.beforeCommand(NexusReaderStreamDataProvider streamDataProvider, java.lang.String commandName, NexusCommandEventReader commandReader)
void	NexusBlockHandler.beforeCommand(NexusReaderStreamDataProvider streamDataProvider, java.lang.String commandName, NexusCommandEventReader commandReader) This method is called before a command found in a block handled by this handler is processed, by calling the according command reader.
void	TaxaBlockHandler.beforeCommand(NexusReaderStreamDataProvider streamDataProvider, java.lang.String commandName, NexusCommandEventReader commandReader)
void	TreesBlockHandler.beforeCommand(NexusReaderStreamDataProvider streamDataProvider, java.lang.String commandName, NexusCommandEventReader commandReader)

Uses of NexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders

Classes in info.bioinfweb.jphyloio.formats.nexus.commandreaders that implement NexusCommandEventReader

Modifier and Type	Class and Description
class	AbstractKeyValueCommandReader
class	AbstractNexusCommandEventReader Implements shared functionality for classes implementing NexusCommandEventReader.
class	DefaultCommandReader Default Nexus command reader for all unsupported Nexus commands.

Methods in info.bioinfweb.jphyloio.formats.nexus.commandreaders that return NexusCommandEventReader

Modifier and Type	Method and Description
NexusCommandEventReader	NexusCommandReaderFactory.createReader(java.lang.String blockName, java.lang.String commandName, NexusReaderStreamDataProvider streamDataProvider) Creates a new reader instance that is able to parse the specified command in the specified block, if an according class was registered in this factory instance.

Method parameters in info.bioinfweb.jphyloio.formats.nexus.commandreaders with type arguments of type NexusCommandEventReader

Modifier and Type	Method and Description
void	NexusCommandReaderFactory.addReaderClass(java.lang.Class<? extends NexusCommandEventReader> readerClass) Adds a new type of reader to this factory instance.

Uses of NexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.all

Classes in info.bioinfweb.jphyloio.formats.nexus.commandreaders.all that implement NexusCommandEventReader

Modifier and Type	Class and Description
class	LinkReader Reads the LINK command of a Nexus block and stores the links in the shared information map of the stream data provider under the key NexusReaderStreamDataProvider.INFO_KEY_BLOCK_LINKS.
class	TitleReader Reads the TITLE command of a Nexus block and stores the title in the shared information map of the stream data provider under the key NexusReaderStreamDataProvider.INFO_KEY_BLOCK_TITLE.

Uses of NexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.characters

Classes in info.bioinfweb.jphyloio.formats.nexus.commandreaders.characters that implement NexusCommandEventReader

Modifier and Type	Class and Description
class	AbstractCharLabelsReader Implements shared functionality for Nexus command readers that process character (alignment column) definitions.
class	CharLabelsReader Nexus reader for the CHARLABELS command that produces CharacterDefinitionEvents.
class	CharStateLabelsReader Nexus reader for the CHARSTATELABELS command that produces CharacterDefinitionEvents.
class	DimensionsReader
class	FormatReader Parser for the Format command in a Characters, Unaligned or Data block.
class	MatrixReader Parser for the MATRIX command in a CHARACTERS, UNALIGNED or DATA block.

Uses of NexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets

Classes in info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets that implement NexusCommandEventReader

Modifier and Type	Class and Description
class	AbstractNexusSetReader General reader implementation to read the Nexus commands that define different kinds of sets.
class	CharSetReader Parser for the CHARSET command in the SETS block.
class	IDBasedSetsReader Base class for all Nexus readers that create set event streams that consist of SetElementEvents.
class	TaxSetReader
class	TreeSetReader

Uses of NexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa

Classes in info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa that implement NexusCommandEventReader

Modifier and Type	Class and Description
class	TaxLabelsReader

Uses of NexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees

Classes in info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees that implement NexusCommandEventReader

Modifier and Type	Class and Description
class	ENewickNetworkReader Nexus command reader for the custom NETWORK command.
class	TranslateReader
class	TreeReader