public interface PhyloXMLConstants
Of interest for application developers are the predicates defined here that allow to read and write PhyloXML-specific tags for predefined annotations.
PhyloXMLEventReader
,
PhyloXMLEventWriter
,
Metadata demo applicationModifier and Type | Field and Description |
---|---|
static java.lang.String |
APPLIES_TO_ANNOTATION |
static java.lang.String |
APPLIES_TO_CLADE |
static java.lang.String |
APPLIES_TO_NODE |
static java.lang.String |
APPLIES_TO_OTHER |
static java.lang.String |
APPLIES_TO_PARENT_BRANCH |
static java.lang.String |
APPLIES_TO_PHYLOGENY |
static javax.xml.namespace.QName |
ATTR_ABSENT_COUNT |
static javax.xml.namespace.QName |
ATTR_ALT_UNIT |
static javax.xml.namespace.QName |
ATTR_APPLIES_TO |
static javax.xml.namespace.QName |
ATTR_BRANCH_LENGTH |
static javax.xml.namespace.QName |
ATTR_BRANCH_LENGTH_UNIT |
static javax.xml.namespace.QName |
ATTR_COLLAPSE |
static javax.xml.namespace.QName |
ATTR_COMMENT |
static javax.xml.namespace.QName |
ATTR_CONFIDENCE |
static javax.xml.namespace.QName |
ATTR_DATATYPE |
static javax.xml.namespace.QName |
ATTR_DESC |
static javax.xml.namespace.QName |
ATTR_DISTANCE |
static javax.xml.namespace.QName |
ATTR_DOI |
static javax.xml.namespace.QName |
ATTR_EVIDENCE |
static javax.xml.namespace.QName |
ATTR_FROM |
static javax.xml.namespace.QName |
ATTR_GAINED_COUNT |
static javax.xml.namespace.QName |
ATTR_GEO_DATUM |
static javax.xml.namespace.QName |
ATTR_ID |
static javax.xml.namespace.QName |
ATTR_ID_PROVIDER |
static javax.xml.namespace.QName |
ATTR_ID_REF |
static javax.xml.namespace.QName |
ATTR_ID_REF_0 |
static javax.xml.namespace.QName |
ATTR_ID_REF_1 |
static javax.xml.namespace.QName |
ATTR_ID_SOURCE |
static javax.xml.namespace.QName |
ATTR_IS_ALIGNED |
static javax.xml.namespace.QName |
ATTR_LENGTH |
static javax.xml.namespace.QName |
ATTR_LOST_COUNT |
static javax.xml.namespace.QName |
ATTR_PRESENT_COUNT |
static javax.xml.namespace.QName |
ATTR_REF |
static javax.xml.namespace.QName |
ATTR_REROOTABLE |
static javax.xml.namespace.QName |
ATTR_ROOTED |
static javax.xml.namespace.QName |
ATTR_SOURCE |
static javax.xml.namespace.QName |
ATTR_STANDARD_DEVIATION |
static javax.xml.namespace.QName |
ATTR_TO |
static javax.xml.namespace.QName |
ATTR_TYPE |
static javax.xml.namespace.QName |
ATTR_UNIT |
static javax.xml.namespace.QName |
DATA_TYPE_BRANCH_COLOR |
static javax.xml.namespace.QName |
DATA_TYPE_EVENTTYPE |
static javax.xml.namespace.QName |
DATA_TYPE_RANK |
static javax.xml.namespace.QName |
DATA_TYPE_SEQUENCE_SYMBOL |
static javax.xml.namespace.QName |
DATA_TYPE_TAXONOMY_CODE |
static java.lang.String |
JPHYLOIO_PHYLOXML_NAMESPACE |
static java.lang.String |
PHYLOXML_DATA_TYPE_NAMESPACE |
static java.lang.String |
PHYLOXML_DEFAULT_PRE |
static java.lang.String |
PHYLOXML_FORMAT_NAME |
static java.lang.String |
PHYLOXML_NAMESPACE |
static java.lang.String |
PHYLOXML_PREDICATE_NAMESPACE |
static java.lang.String |
PHYLOXML_SCHEMA_LOCATION_URI |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_ATTR_EVIDENCE |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_ATTR_REF |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_ATTR_SOURCE |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_CONFIDENCE |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_CONFIDENCE_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_CONFIDENCE_VALUE |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_DESC |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_PROPERTY |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_PROPERTY_ATTR_APPLIES_TO |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_PROPERTY_ATTR_DATATYPE |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_PROPERTY_ATTR_ID_REF |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_PROPERTY_ATTR_UNIT |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_URI |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_URI_ATTR_DESC |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_URI_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_ANNOTATION_URI_VALUE |
static javax.xml.namespace.QName |
PREDICATE_ATTR_COLLAPSE |
static javax.xml.namespace.QName |
PREDICATE_ATTR_ID_SOURCE |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_ABSENT |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_ABSENT_BC |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_ATTR_ABSENT_COUNT |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_ATTR_GAINED_COUNT |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_ATTR_LOST_COUNT |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_ATTR_PRESENT_COUNT |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_GAINED |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_GAINED_BC |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_LOST |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_LOST_BC |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_PRESENT |
static javax.xml.namespace.QName |
PREDICATE_BINARY_CHARACTERS_PRESENT_BC |
static javax.xml.namespace.QName |
PREDICATE_CLADE_REL |
static javax.xml.namespace.QName |
PREDICATE_CLADE_REL_ATTR_DISTANCE |
static javax.xml.namespace.QName |
PREDICATE_CLADE_REL_ATTR_IDREF0 |
static javax.xml.namespace.QName |
PREDICATE_CLADE_REL_ATTR_IDREF1 |
static javax.xml.namespace.QName |
PREDICATE_CLADE_REL_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_COLOR |
static javax.xml.namespace.QName |
PREDICATE_COLOR_ALPHA |
static javax.xml.namespace.QName |
PREDICATE_COLOR_BLUE |
static javax.xml.namespace.QName |
PREDICATE_COLOR_GREEN |
static javax.xml.namespace.QName |
PREDICATE_COLOR_RED |
static javax.xml.namespace.QName |
PREDICATE_CONFIDENCE |
static javax.xml.namespace.QName |
PREDICATE_CONFIDENCE_ATTR_STDDEV |
static javax.xml.namespace.QName |
PREDICATE_CONFIDENCE_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_CONFIDENCE_VALUE |
static javax.xml.namespace.QName |
PREDICATE_DATE |
static javax.xml.namespace.QName |
PREDICATE_DATE_ATTR_UNIT |
static javax.xml.namespace.QName |
PREDICATE_DATE_DESC |
static javax.xml.namespace.QName |
PREDICATE_DATE_MAXIMUM |
static javax.xml.namespace.QName |
PREDICATE_DATE_MINIMUM |
static javax.xml.namespace.QName |
PREDICATE_DATE_VALUE |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_DESC |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POINT |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POINT_ALT |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POINT_ATTR_ALT_UNIT |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POINT_ATTR_GEODETIC_DATUM |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POINT_LAT |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POINT_LONG |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POLYGON |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POLYGON_POINT |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POLYGON_POINT_ALT |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POLYGON_POINT_ATTR_ALT_UNIT |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POLYGON_POINT_ATTR_GEODETIC_DATUM |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POLYGON_POINT_LAT |
static javax.xml.namespace.QName |
PREDICATE_DISTRIBUTION_POLYGON_POINT_LONG |
static javax.xml.namespace.QName |
PREDICATE_DOMAIN_ARCHITECTURE |
static javax.xml.namespace.QName |
PREDICATE_DOMAIN_ARCHITECTURE_ATTR_LENGTH |
static javax.xml.namespace.QName |
PREDICATE_DOMAIN_ARCHITECTURE_DOMAIN |
static javax.xml.namespace.QName |
PREDICATE_DOMAIN_ARCHITECTURE_DOMAIN_ATTR_CONFIDENCE |
static javax.xml.namespace.QName |
PREDICATE_DOMAIN_ARCHITECTURE_DOMAIN_ATTR_FROM |
static javax.xml.namespace.QName |
PREDICATE_DOMAIN_ARCHITECTURE_DOMAIN_ATTR_ID |
static javax.xml.namespace.QName |
PREDICATE_DOMAIN_ARCHITECTURE_DOMAIN_ATTR_TO |
static javax.xml.namespace.QName |
PREDICATE_DOMAIN_ARCHITECTURE_DOMAIN_VALUE |
static javax.xml.namespace.QName |
PREDICATE_EVENTS |
static javax.xml.namespace.QName |
PREDICATE_EVENTS_CONFIDENCE |
static javax.xml.namespace.QName |
PREDICATE_EVENTS_CONFIDENCE_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_EVENTS_CONFIDENCE_VALUE |
static javax.xml.namespace.QName |
PREDICATE_EVENTS_DUPLICATIONS |
static javax.xml.namespace.QName |
PREDICATE_EVENTS_LOSSES |
static javax.xml.namespace.QName |
PREDICATE_EVENTS_SPECIATIONS |
static javax.xml.namespace.QName |
PREDICATE_EVENTS_TYPE |
static javax.xml.namespace.QName |
PREDICATE_NODE_ID |
static javax.xml.namespace.QName |
PREDICATE_NODE_ID_ATTR_PROVIDER |
static javax.xml.namespace.QName |
PREDICATE_NODE_ID_VALUE |
static javax.xml.namespace.QName |
PREDICATE_PHYLOGENY_ATTR_BRANCH_LENGTH_UNIT |
static javax.xml.namespace.QName |
PREDICATE_PHYLOGENY_ATTR_REROOTABLE |
static javax.xml.namespace.QName |
PREDICATE_PHYLOGENY_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_PHYLOGENY_DATE |
static javax.xml.namespace.QName |
PREDICATE_PHYLOGENY_DESCRIPTION |
static javax.xml.namespace.QName |
PREDICATE_PHYLOGENY_ID |
static javax.xml.namespace.QName |
PREDICATE_PHYLOGENY_ID_ATTR_PROVIDER |
static javax.xml.namespace.QName |
PREDICATE_PHYLOGENY_ID_VALUE |
static javax.xml.namespace.QName |
PREDICATE_PROPERTY |
static javax.xml.namespace.QName |
PREDICATE_PROPERTY_ATTR_APPLIES_TO |
static javax.xml.namespace.QName |
PREDICATE_PROPERTY_ATTR_ID_REF |
static javax.xml.namespace.QName |
PREDICATE_PROPERTY_ATTR_UNIT |
static javax.xml.namespace.QName |
PREDICATE_REFERENCE |
static javax.xml.namespace.QName |
PREDICATE_REFERENCE_ATTR_DOI |
static javax.xml.namespace.QName |
PREDICATE_REFERENCE_DESC |
static javax.xml.namespace.QName |
PREDICATE_REFERENCE_VALUE |
static javax.xml.namespace.QName |
PREDICATE_SEQ_REL |
static javax.xml.namespace.QName |
PREDICATE_SEQ_REL_ATTR_DISTANCE |
static javax.xml.namespace.QName |
PREDICATE_SEQ_REL_ATTR_IDREF0 |
static javax.xml.namespace.QName |
PREDICATE_SEQ_REL_ATTR_IDREF1 |
static javax.xml.namespace.QName |
PREDICATE_SEQ_REL_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_SEQ_REL_CONFIDENCE |
static javax.xml.namespace.QName |
PREDICATE_SEQ_REL_CONFIDENCE_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_SEQ_REL_CONFIDENCE_VALUE |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_ACCESSION |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_ACCESSION_ATTR_COMMENT |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_ACCESSION_ATTR_SOURCE |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_ACCESSION_VALUE |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_ATTR_ID_REF |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_CROSS_REFERENCES |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_CROSS_REFERENCES_ACCESSION |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_CROSS_REFERENCES_ACCESSION_ATTR_COMMENT |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_CROSS_REFERENCES_ACCESSION_ATTR_SOURCE |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_CROSS_REFERENCES_ACCESSION_VALUE |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_GENE_NAME |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_LOCATION |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_MOL_SEQ |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_MOL_SEQ_ATTR_IS_ALIGNED |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_MOL_SEQ_VALUE |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_NAME |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_SYMBOL |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_URI |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_URI_ATTR_DESC |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_URI_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_SEQUENCE_URI_VALUE |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_AUTHORITY |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_CODE |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_COMMON_NAME |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_ID |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_ID_ATTR_PROVIDER |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_ID_VALUE |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_RANK |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_SCIENTIFIC_NAME |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_SYNONYM |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_URI |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_URI_ATTR_DESC |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_URI_ATTR_TYPE |
static javax.xml.namespace.QName |
PREDICATE_TAXONOMY_URI_VALUE |
static javax.xml.namespace.QName |
PREDICATE_WIDTH |
static javax.xml.namespace.QName |
TAG_ABSENT |
static javax.xml.namespace.QName |
TAG_ACCESSION |
static javax.xml.namespace.QName |
TAG_ALPHA |
static javax.xml.namespace.QName |
TAG_ALT |
static javax.xml.namespace.QName |
TAG_ANNOTATION |
static javax.xml.namespace.QName |
TAG_AUTHORITY |
static javax.xml.namespace.QName |
TAG_BC |
static javax.xml.namespace.QName |
TAG_BINARY_CHARACTERS |
static javax.xml.namespace.QName |
TAG_BLUE |
static javax.xml.namespace.QName |
TAG_BRANCH_COLOR |
static javax.xml.namespace.QName |
TAG_BRANCH_LENGTH |
static javax.xml.namespace.QName |
TAG_BRANCH_WIDTH |
static javax.xml.namespace.QName |
TAG_CLADE |
static javax.xml.namespace.QName |
TAG_CLADE_RELATION |
static javax.xml.namespace.QName |
TAG_CODE |
static javax.xml.namespace.QName |
TAG_COMMON_NAME |
static javax.xml.namespace.QName |
TAG_CONFIDENCE |
static javax.xml.namespace.QName |
TAG_CROSS_REFERENCES |
static javax.xml.namespace.QName |
TAG_DATE |
static javax.xml.namespace.QName |
TAG_DESC |
static javax.xml.namespace.QName |
TAG_DESCRIPTION |
static javax.xml.namespace.QName |
TAG_DISTRIBUTION |
static javax.xml.namespace.QName |
TAG_DOMAIN |
static javax.xml.namespace.QName |
TAG_DOMAIN_ARCHITECTURE |
static javax.xml.namespace.QName |
TAG_DUPLICATIONS |
static javax.xml.namespace.QName |
TAG_EVENTS |
static javax.xml.namespace.QName |
TAG_GAINED |
static javax.xml.namespace.QName |
TAG_GENE_NAME |
static javax.xml.namespace.QName |
TAG_GREEN |
static javax.xml.namespace.QName |
TAG_ID |
static javax.xml.namespace.QName |
TAG_LAT |
static javax.xml.namespace.QName |
TAG_LOCATION |
static javax.xml.namespace.QName |
TAG_LONG |
static javax.xml.namespace.QName |
TAG_LOSSES |
static javax.xml.namespace.QName |
TAG_LOST |
static javax.xml.namespace.QName |
TAG_MAXIMUM |
static javax.xml.namespace.QName |
TAG_MINIMUM |
static javax.xml.namespace.QName |
TAG_MOL_SEQ |
static javax.xml.namespace.QName |
TAG_NAME |
static javax.xml.namespace.QName |
TAG_NODE_ID |
static javax.xml.namespace.QName |
TAG_PHYLOGENY |
static javax.xml.namespace.QName |
TAG_POINT |
static javax.xml.namespace.QName |
TAG_POLYGON |
static javax.xml.namespace.QName |
TAG_PRESENT |
static javax.xml.namespace.QName |
TAG_PROPERTY |
static javax.xml.namespace.QName |
TAG_RANK |
static javax.xml.namespace.QName |
TAG_RED |
static javax.xml.namespace.QName |
TAG_REFERENCE |
static javax.xml.namespace.QName |
TAG_ROOT |
static javax.xml.namespace.QName |
TAG_SCI_NAME |
static javax.xml.namespace.QName |
TAG_SEQUENCE |
static javax.xml.namespace.QName |
TAG_SEQUENCE_RELATION |
static javax.xml.namespace.QName |
TAG_SPECIATIONS |
static javax.xml.namespace.QName |
TAG_SYMBOL |
static javax.xml.namespace.QName |
TAG_SYNONYM |
static javax.xml.namespace.QName |
TAG_TAXONOMY |
static javax.xml.namespace.QName |
TAG_TYPE |
static javax.xml.namespace.QName |
TAG_URI |
static javax.xml.namespace.QName |
TAG_VALUE |
static java.lang.String |
TYPE_NETWORK_EDGE |
static final java.lang.String PHYLOXML_FORMAT_NAME
static final java.lang.String PHYLOXML_DEFAULT_PRE
static final java.lang.String PHYLOXML_NAMESPACE
static final java.lang.String JPHYLOIO_PHYLOXML_NAMESPACE
static final java.lang.String PHYLOXML_SCHEMA_LOCATION_URI
static final javax.xml.namespace.QName TAG_ROOT
static final javax.xml.namespace.QName TAG_PHYLOGENY
static final javax.xml.namespace.QName TAG_NAME
static final javax.xml.namespace.QName TAG_ID
static final javax.xml.namespace.QName TAG_DESCRIPTION
static final javax.xml.namespace.QName TAG_DATE
static final javax.xml.namespace.QName TAG_CONFIDENCE
static final javax.xml.namespace.QName TAG_CLADE_RELATION
static final javax.xml.namespace.QName TAG_SEQUENCE_RELATION
static final javax.xml.namespace.QName TAG_PROPERTY
static final javax.xml.namespace.QName TAG_CLADE
static final javax.xml.namespace.QName TAG_BRANCH_LENGTH
static final javax.xml.namespace.QName TAG_BRANCH_WIDTH
static final javax.xml.namespace.QName TAG_BRANCH_COLOR
static final javax.xml.namespace.QName TAG_RED
static final javax.xml.namespace.QName TAG_GREEN
static final javax.xml.namespace.QName TAG_BLUE
static final javax.xml.namespace.QName TAG_ALPHA
static final javax.xml.namespace.QName TAG_NODE_ID
static final javax.xml.namespace.QName TAG_TAXONOMY
static final javax.xml.namespace.QName TAG_CODE
static final javax.xml.namespace.QName TAG_SCI_NAME
static final javax.xml.namespace.QName TAG_AUTHORITY
static final javax.xml.namespace.QName TAG_COMMON_NAME
static final javax.xml.namespace.QName TAG_SYNONYM
static final javax.xml.namespace.QName TAG_RANK
static final javax.xml.namespace.QName TAG_URI
static final javax.xml.namespace.QName TAG_SEQUENCE
static final javax.xml.namespace.QName TAG_SYMBOL
static final javax.xml.namespace.QName TAG_ACCESSION
static final javax.xml.namespace.QName TAG_LOCATION
static final javax.xml.namespace.QName TAG_MOL_SEQ
static final javax.xml.namespace.QName TAG_ANNOTATION
static final javax.xml.namespace.QName TAG_DOMAIN_ARCHITECTURE
static final javax.xml.namespace.QName TAG_DOMAIN
static final javax.xml.namespace.QName TAG_GENE_NAME
static final javax.xml.namespace.QName TAG_CROSS_REFERENCES
static final javax.xml.namespace.QName TAG_EVENTS
static final javax.xml.namespace.QName TAG_TYPE
static final javax.xml.namespace.QName TAG_DUPLICATIONS
static final javax.xml.namespace.QName TAG_SPECIATIONS
static final javax.xml.namespace.QName TAG_LOSSES
static final javax.xml.namespace.QName TAG_BINARY_CHARACTERS
static final javax.xml.namespace.QName TAG_GAINED
static final javax.xml.namespace.QName TAG_LOST
static final javax.xml.namespace.QName TAG_PRESENT
static final javax.xml.namespace.QName TAG_ABSENT
static final javax.xml.namespace.QName TAG_BC
static final javax.xml.namespace.QName TAG_DISTRIBUTION
static final javax.xml.namespace.QName TAG_DESC
static final javax.xml.namespace.QName TAG_POINT
static final javax.xml.namespace.QName TAG_LAT
static final javax.xml.namespace.QName TAG_LONG
static final javax.xml.namespace.QName TAG_ALT
static final javax.xml.namespace.QName TAG_POLYGON
static final javax.xml.namespace.QName TAG_REFERENCE
static final javax.xml.namespace.QName TAG_VALUE
static final javax.xml.namespace.QName TAG_MINIMUM
static final javax.xml.namespace.QName TAG_MAXIMUM
static final javax.xml.namespace.QName ATTR_ROOTED
static final javax.xml.namespace.QName ATTR_REROOTABLE
static final javax.xml.namespace.QName ATTR_BRANCH_LENGTH_UNIT
static final javax.xml.namespace.QName ATTR_TYPE
static final javax.xml.namespace.QName ATTR_BRANCH_LENGTH
static final javax.xml.namespace.QName ATTR_ID_SOURCE
static final javax.xml.namespace.QName ATTR_COLLAPSE
static final javax.xml.namespace.QName ATTR_ID_PROVIDER
static final javax.xml.namespace.QName ATTR_ID_REF_0
static final javax.xml.namespace.QName ATTR_ID_REF_1
static final javax.xml.namespace.QName ATTR_DISTANCE
static final javax.xml.namespace.QName ATTR_REF
static final javax.xml.namespace.QName ATTR_UNIT
static final javax.xml.namespace.QName ATTR_DATATYPE
static final javax.xml.namespace.QName ATTR_APPLIES_TO
static final javax.xml.namespace.QName ATTR_ID_REF
static final javax.xml.namespace.QName ATTR_DESC
static final javax.xml.namespace.QName ATTR_SOURCE
static final javax.xml.namespace.QName ATTR_IS_ALIGNED
static final javax.xml.namespace.QName ATTR_EVIDENCE
static final javax.xml.namespace.QName ATTR_LENGTH
static final javax.xml.namespace.QName ATTR_GEO_DATUM
static final javax.xml.namespace.QName ATTR_ALT_UNIT
static final javax.xml.namespace.QName ATTR_DOI
static final javax.xml.namespace.QName ATTR_GAINED_COUNT
static final javax.xml.namespace.QName ATTR_LOST_COUNT
static final javax.xml.namespace.QName ATTR_PRESENT_COUNT
static final javax.xml.namespace.QName ATTR_ABSENT_COUNT
static final javax.xml.namespace.QName ATTR_FROM
static final javax.xml.namespace.QName ATTR_TO
static final javax.xml.namespace.QName ATTR_CONFIDENCE
static final javax.xml.namespace.QName ATTR_ID
static final javax.xml.namespace.QName ATTR_COMMENT
static final javax.xml.namespace.QName ATTR_STANDARD_DEVIATION
static final java.lang.String APPLIES_TO_PHYLOGENY
static final java.lang.String APPLIES_TO_CLADE
static final java.lang.String APPLIES_TO_NODE
static final java.lang.String APPLIES_TO_ANNOTATION
static final java.lang.String APPLIES_TO_PARENT_BRANCH
static final java.lang.String APPLIES_TO_OTHER
static final java.lang.String TYPE_NETWORK_EDGE
static final java.lang.String PHYLOXML_PREDICATE_NAMESPACE
static final javax.xml.namespace.QName PREDICATE_PHYLOGENY_ID
static final javax.xml.namespace.QName PREDICATE_PHYLOGENY_ID_VALUE
static final javax.xml.namespace.QName PREDICATE_PHYLOGENY_ID_ATTR_PROVIDER
static final javax.xml.namespace.QName PREDICATE_PHYLOGENY_DESCRIPTION
static final javax.xml.namespace.QName PREDICATE_PHYLOGENY_DATE
static final javax.xml.namespace.QName PREDICATE_PHYLOGENY_ATTR_REROOTABLE
static final javax.xml.namespace.QName PREDICATE_PHYLOGENY_ATTR_BRANCH_LENGTH_UNIT
static final javax.xml.namespace.QName PREDICATE_PHYLOGENY_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_CLADE_REL
static final javax.xml.namespace.QName PREDICATE_CLADE_REL_ATTR_IDREF0
static final javax.xml.namespace.QName PREDICATE_CLADE_REL_ATTR_IDREF1
static final javax.xml.namespace.QName PREDICATE_CLADE_REL_ATTR_DISTANCE
static final javax.xml.namespace.QName PREDICATE_CLADE_REL_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_SEQ_REL
static final javax.xml.namespace.QName PREDICATE_SEQ_REL_ATTR_IDREF0
static final javax.xml.namespace.QName PREDICATE_SEQ_REL_ATTR_IDREF1
static final javax.xml.namespace.QName PREDICATE_SEQ_REL_ATTR_DISTANCE
static final javax.xml.namespace.QName PREDICATE_SEQ_REL_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_SEQ_REL_CONFIDENCE
static final javax.xml.namespace.QName PREDICATE_SEQ_REL_CONFIDENCE_VALUE
static final javax.xml.namespace.QName PREDICATE_SEQ_REL_CONFIDENCE_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_ATTR_ID_SOURCE
static final javax.xml.namespace.QName PREDICATE_ATTR_COLLAPSE
static final javax.xml.namespace.QName PREDICATE_WIDTH
static final javax.xml.namespace.QName PREDICATE_COLOR
static final javax.xml.namespace.QName PREDICATE_COLOR_RED
static final javax.xml.namespace.QName PREDICATE_COLOR_GREEN
static final javax.xml.namespace.QName PREDICATE_COLOR_BLUE
static final javax.xml.namespace.QName PREDICATE_COLOR_ALPHA
static final javax.xml.namespace.QName PREDICATE_CONFIDENCE
static final javax.xml.namespace.QName PREDICATE_CONFIDENCE_VALUE
static final javax.xml.namespace.QName PREDICATE_CONFIDENCE_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_CONFIDENCE_ATTR_STDDEV
static final javax.xml.namespace.QName PREDICATE_NODE_ID
static final javax.xml.namespace.QName PREDICATE_NODE_ID_VALUE
static final javax.xml.namespace.QName PREDICATE_NODE_ID_ATTR_PROVIDER
static final javax.xml.namespace.QName PREDICATE_TAXONOMY
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_ID
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_ID_VALUE
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_ID_ATTR_PROVIDER
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_CODE
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_SCIENTIFIC_NAME
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_AUTHORITY
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_COMMON_NAME
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_SYNONYM
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_RANK
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_URI
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_URI_VALUE
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_URI_ATTR_DESC
static final javax.xml.namespace.QName PREDICATE_TAXONOMY_URI_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_SEQUENCE
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_SYMBOL
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_ACCESSION
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_ACCESSION_VALUE
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_ACCESSION_ATTR_COMMENT
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_ACCESSION_ATTR_SOURCE
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_NAME
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_LOCATION
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_MOL_SEQ
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_MOL_SEQ_VALUE
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_MOL_SEQ_ATTR_IS_ALIGNED
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_URI
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_URI_VALUE
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_URI_ATTR_DESC
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_URI_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_GENE_NAME
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_CROSS_REFERENCES
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_CROSS_REFERENCES_ACCESSION
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_CROSS_REFERENCES_ACCESSION_VALUE
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_CROSS_REFERENCES_ACCESSION_ATTR_COMMENT
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_CROSS_REFERENCES_ACCESSION_ATTR_SOURCE
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_SEQUENCE_ATTR_ID_REF
static final javax.xml.namespace.QName PREDICATE_DOMAIN_ARCHITECTURE
static final javax.xml.namespace.QName PREDICATE_DOMAIN_ARCHITECTURE_DOMAIN
static final javax.xml.namespace.QName PREDICATE_DOMAIN_ARCHITECTURE_DOMAIN_VALUE
static final javax.xml.namespace.QName PREDICATE_DOMAIN_ARCHITECTURE_DOMAIN_ATTR_FROM
static final javax.xml.namespace.QName PREDICATE_DOMAIN_ARCHITECTURE_DOMAIN_ATTR_TO
static final javax.xml.namespace.QName PREDICATE_DOMAIN_ARCHITECTURE_DOMAIN_ATTR_CONFIDENCE
static final javax.xml.namespace.QName PREDICATE_DOMAIN_ARCHITECTURE_DOMAIN_ATTR_ID
static final javax.xml.namespace.QName PREDICATE_DOMAIN_ARCHITECTURE_ATTR_LENGTH
static final javax.xml.namespace.QName PREDICATE_ANNOTATION
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_DESC
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_CONFIDENCE
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_CONFIDENCE_VALUE
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_CONFIDENCE_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_PROPERTY
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_PROPERTY_ATTR_UNIT
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_PROPERTY_ATTR_DATATYPE
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_PROPERTY_ATTR_APPLIES_TO
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_PROPERTY_ATTR_ID_REF
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_URI
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_URI_VALUE
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_URI_ATTR_DESC
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_URI_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_ATTR_REF
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_ATTR_SOURCE
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_ATTR_EVIDENCE
static final javax.xml.namespace.QName PREDICATE_ANNOTATION_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_EVENTS
static final javax.xml.namespace.QName PREDICATE_EVENTS_TYPE
static final javax.xml.namespace.QName PREDICATE_EVENTS_DUPLICATIONS
static final javax.xml.namespace.QName PREDICATE_EVENTS_SPECIATIONS
static final javax.xml.namespace.QName PREDICATE_EVENTS_LOSSES
static final javax.xml.namespace.QName PREDICATE_EVENTS_CONFIDENCE
static final javax.xml.namespace.QName PREDICATE_EVENTS_CONFIDENCE_VALUE
static final javax.xml.namespace.QName PREDICATE_EVENTS_CONFIDENCE_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_GAINED
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_GAINED_BC
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_LOST
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_LOST_BC
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_PRESENT
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_PRESENT_BC
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_ABSENT
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_ABSENT_BC
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_ATTR_TYPE
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_ATTR_GAINED_COUNT
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_ATTR_LOST_COUNT
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_ATTR_PRESENT_COUNT
static final javax.xml.namespace.QName PREDICATE_BINARY_CHARACTERS_ATTR_ABSENT_COUNT
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_DESC
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POINT
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POINT_LAT
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POINT_LONG
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POINT_ALT
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POINT_ATTR_GEODETIC_DATUM
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POINT_ATTR_ALT_UNIT
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POLYGON
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POLYGON_POINT
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POLYGON_POINT_LAT
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POLYGON_POINT_LONG
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POLYGON_POINT_ALT
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POLYGON_POINT_ATTR_GEODETIC_DATUM
static final javax.xml.namespace.QName PREDICATE_DISTRIBUTION_POLYGON_POINT_ATTR_ALT_UNIT
static final javax.xml.namespace.QName PREDICATE_DATE
static final javax.xml.namespace.QName PREDICATE_DATE_DESC
static final javax.xml.namespace.QName PREDICATE_DATE_VALUE
static final javax.xml.namespace.QName PREDICATE_DATE_MINIMUM
static final javax.xml.namespace.QName PREDICATE_DATE_MAXIMUM
static final javax.xml.namespace.QName PREDICATE_DATE_ATTR_UNIT
static final javax.xml.namespace.QName PREDICATE_REFERENCE
static final javax.xml.namespace.QName PREDICATE_REFERENCE_DESC
static final javax.xml.namespace.QName PREDICATE_REFERENCE_VALUE
static final javax.xml.namespace.QName PREDICATE_REFERENCE_ATTR_DOI
static final javax.xml.namespace.QName PREDICATE_PROPERTY
static final javax.xml.namespace.QName PREDICATE_PROPERTY_ATTR_UNIT
static final javax.xml.namespace.QName PREDICATE_PROPERTY_ATTR_APPLIES_TO
static final javax.xml.namespace.QName PREDICATE_PROPERTY_ATTR_ID_REF
static final java.lang.String PHYLOXML_DATA_TYPE_NAMESPACE
static final javax.xml.namespace.QName DATA_TYPE_BRANCH_COLOR
static final javax.xml.namespace.QName DATA_TYPE_EVENTTYPE
static final javax.xml.namespace.QName DATA_TYPE_RANK
static final javax.xml.namespace.QName DATA_TYPE_SEQUENCE_SYMBOL
static final javax.xml.namespace.QName DATA_TYPE_TAXONOMY_CODE