| Package | Description | 
|---|---|
| info.bioinfweb.jphyloio.formats.newick | Contains classes for reading from and writing to streams/files in Newick tree format. | 
| info.bioinfweb.jphyloio.formats.phyloxml | Contains classes for reading from and writing to streams/files in PhyloXML format. | 
| info.bioinfweb.jphyloio.formats.phyloxml.receivers | Contains implementations for  JPhyloIOEventReceivernecessary for writing
 PhyloXML. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | NHXUtilsTool method for working with NHX annotation on Newick strings. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | PhyloXMLColorTranslatorObject translator between  Colorand the PhyloXML complex type 
 BranchColor. | 
| class  | PhyloXMLEventReaderEvent reader for the PhyloXML format. | 
| class  | PhyloXMLEventWriterEvent writer for the PhyloXML format. | 
| class  | PhyloXMLFactoryReader and writer factory for the PhyloXML format. | 
| class  | PhyloXMLWriterStreamDataProviderThe  XMLWriterStreamDataProviderused byPhyloXMLEventWriter. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | PhyloXMLCollectMetadataDataReceiverReceiver that is used to collect information from meta events (e.g. | 
| class  | PhyloXMLMetaDataReceiverReceiver that implements a general strategy of writing metadata to a PhyloXML document. | 
| class  | PhyloXMLOnlyCustomXMLDataReceiverReceiver, that  writes only custom XML, e.g nested under  document. | 
| class  | PhyloXMLPropertyMetadataReceiverThis receiver is used to write the contents of meta events to a document, if their predicates indicate 
 that they contain information about a PhyloXML  propertytag. | 
| class  | PhyloXMLSpecificPredicatesDataReceiverReceiver that is used to translate between meta events with certain predicates indicating 
 they contain information about a PhyloXML tag and the actual tag. |