info.bioinfweb.jphyloio.formats.phyloxml

Class PhyloXMLReaderStreamDataProvider

java.lang.Object

info.bioinfweb.jphyloio.ReaderStreamDataProvider<R>

info.bioinfweb.jphyloio.formats.xml.XMLReaderStreamDataProvider<PhyloXMLEventReader>

info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLReaderStreamDataProvider

public class PhyloXMLReaderStreamDataProvider
extends XMLReaderStreamDataProvider<PhyloXMLEventReader>

The XMLReaderStreamDataProvider used by PhyloXMLEventReader.

Author:

Sarah Wiechers

Constructor Summary

Constructors

Constructor and Description
PhyloXMLReaderStreamDataProvider(PhyloXMLEventReader eventReader)

Method Summary

Modifier and Type	Method and Description
java.util.Map<java.lang.String,java.lang.String>	getIdSourceToEventIDMap()
java.lang.String	getLastNodeID()
java.lang.String	getTreeLabel()
boolean	isCreatePhylogenyStart()
boolean	isCreateTreeGroupEnd()
boolean	isCreateTreeGroupStart()
boolean	isFirstContentEvent()
boolean	isPropertyHasResource()
boolean	isPropertyIsURI()
boolean	isResetEventCollection()
void	setCreatePhylogenyStart(boolean createPhylogenyStart)
void	setCreateTreeGroupEnd(boolean createTreeGroupEnd)
void	setCreateTreeGroupStart(boolean createTreeGroupStart)
void	setFirstContentEvent(boolean isFirstContentEvent)
void	setLastNodeID(java.lang.String lastNodeID)
void	setPropertyHasResource(boolean propertyHasResource)
void	setPropertyIsURI(boolean propertyIsURI)
void	setResetEventCollection(boolean resetEventCollection)
void	setTreeLabel(java.lang.String treeLabel)

Methods inherited from class info.bioinfweb.jphyloio.formats.xml.XMLReaderStreamDataProvider

getCharacterSetType, getEdgeInfos, getElementName, getIncompleteToken, getNestedMetaNames, getParentName, getSourceNode, getStartDocumentEvent, getXMLReader, hasIncompleteToken, isCreateNodeStart, isCustomXMLStartWritten, isRootedPhylogeny, setCharacterSetType, setCreateNodeStart, setCustomXMLStartWritten, setElementName, setIncompleteToken, setParentName, setRootedPhylogeny, setStartDocumentEvent

Methods inherited from class info.bioinfweb.jphyloio.ReaderStreamDataProvider

eventsUpcoming, getCurrentEventCollection, getEventReader, getIDManager, getParameters, getSequenceTokensEventManager, hasSpecialEventCollection, resetCurrentEventCollection, setCurrentEventCollection

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhyloXMLReaderStreamDataProvider

public PhyloXMLReaderStreamDataProvider(PhyloXMLEventReader eventReader)

Method Detail

getTreeLabel

public java.lang.String getTreeLabel()

setTreeLabel

public void setTreeLabel(java.lang.String treeLabel)

isCreateTreeGroupStart

public boolean isCreateTreeGroupStart()

setCreateTreeGroupStart

public void setCreateTreeGroupStart(boolean createTreeGroupStart)

isCreatePhylogenyStart

public boolean isCreatePhylogenyStart()

setCreatePhylogenyStart

public void setCreatePhylogenyStart(boolean createPhylogenyStart)

isCreateTreeGroupEnd

public boolean isCreateTreeGroupEnd()

setCreateTreeGroupEnd

public void setCreateTreeGroupEnd(boolean createTreeGroupEnd)

getLastNodeID

public java.lang.String getLastNodeID()

setLastNodeID

public void setLastNodeID(java.lang.String lastNodeID)

isFirstContentEvent

public boolean isFirstContentEvent()

setFirstContentEvent

public void setFirstContentEvent(boolean isFirstContentEvent)

getIdSourceToEventIDMap

public java.util.Map<java.lang.String,java.lang.String> getIdSourceToEventIDMap()

isResetEventCollection

public boolean isResetEventCollection()

setResetEventCollection

public void setResetEventCollection(boolean resetEventCollection)

isPropertyHasResource

public boolean isPropertyHasResource()

setPropertyHasResource

public void setPropertyHasResource(boolean propertyHasResource)

isPropertyIsURI

public boolean isPropertyIsURI()

setPropertyIsURI

public void setPropertyIsURI(boolean propertyIsURI)