info.bioinfweb.jphyloio.formats.xml

Class XMLReaderStreamDataProvider<R extends AbstractXMLEventReader<? extends XMLReaderStreamDataProvider<R>>>

java.lang.Object

info.bioinfweb.jphyloio.ReaderStreamDataProvider<R>

info.bioinfweb.jphyloio.formats.xml.XMLReaderStreamDataProvider<R>

Direct Known Subclasses:

NeXMLReaderStreamDataProvider, PDEReaderStreamDataProvider, PhyloXMLReaderStreamDataProvider

public class XMLReaderStreamDataProvider<R extends AbstractXMLEventReader<? extends XMLReaderStreamDataProvider<R>>>
extends ReaderStreamDataProvider<R>

Stores data that shall be shared among different implementations of XMLElementReader reading from the same document.

Author:

Sarah Wiechers

Constructor Summary

Constructors

Constructor and Description
XMLReaderStreamDataProvider(R eventReader)

Method Summary

Modifier and Type	Method and Description
CharacterStateSetType	getCharacterSetType()
java.util.Stack<java.util.Queue<NodeEdgeInfo>>	getEdgeInfos()
java.lang.String	getElementName()
java.lang.String	getIncompleteToken()
java.util.Stack<java.lang.String>	getNestedMetaNames()
java.lang.String	getParentName()
java.util.Stack<NodeEdgeInfo>	getSourceNode()
javax.xml.stream.events.StartDocument	getStartDocumentEvent()
javax.xml.stream.XMLEventReader	getXMLReader()
boolean	hasIncompleteToken()
boolean	isCreateNodeStart()
boolean	isCustomXMLStartWritten()
boolean	isRootedPhylogeny()
void	setCharacterSetType(CharacterStateSetType characterSetType)
void	setCreateNodeStart(boolean createNodeStart)
void	setCustomXMLStartWritten(boolean isFirstCustomXMLElement)
void	setElementName(java.lang.String elementName)
void	setIncompleteToken(java.lang.String incompleteToken)
void	setParentName(java.lang.String parentName)
void	setRootedPhylogeny(boolean isRootedPhylogeny)
void	setStartDocumentEvent(javax.xml.stream.events.StartDocument startDocumentEvent)

Methods inherited from class info.bioinfweb.jphyloio.ReaderStreamDataProvider

eventsUpcoming, getCurrentEventCollection, getEventReader, getIDManager, getParameters, getSequenceTokensEventManager, hasSpecialEventCollection, resetCurrentEventCollection, setCurrentEventCollection

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

XMLReaderStreamDataProvider

public XMLReaderStreamDataProvider(R eventReader)

Method Detail

getXMLReader

public javax.xml.stream.XMLEventReader getXMLReader()

getParentName

public java.lang.String getParentName()

setParentName

public void setParentName(java.lang.String parentName)

getElementName

public java.lang.String getElementName()

setElementName

public void setElementName(java.lang.String elementName)

getStartDocumentEvent

public javax.xml.stream.events.StartDocument getStartDocumentEvent()

setStartDocumentEvent

public void setStartDocumentEvent(javax.xml.stream.events.StartDocument startDocumentEvent)

getNestedMetaNames

public java.util.Stack<java.lang.String> getNestedMetaNames()

isCustomXMLStartWritten

public boolean isCustomXMLStartWritten()

setCustomXMLStartWritten

public void setCustomXMLStartWritten(boolean isFirstCustomXMLElement)

hasIncompleteToken

public boolean hasIncompleteToken()

getIncompleteToken

public java.lang.String getIncompleteToken()

setIncompleteToken

public void setIncompleteToken(java.lang.String incompleteToken)

isRootedPhylogeny

public boolean isRootedPhylogeny()

setRootedPhylogeny

public void setRootedPhylogeny(boolean isRootedPhylogeny)

getCharacterSetType

public CharacterStateSetType getCharacterSetType()

setCharacterSetType

public void setCharacterSetType(CharacterStateSetType characterSetType)

getSourceNode

public java.util.Stack<NodeEdgeInfo> getSourceNode()

getEdgeInfos

public java.util.Stack<java.util.Queue<NodeEdgeInfo>> getEdgeInfos()

isCreateNodeStart

public boolean isCreateNodeStart()

setCreateNodeStart

public void setCreateNodeStart(boolean createNodeStart)