Package | Description |
---|---|
info.bioinfweb.jphyloio.formats.nexml |
Contains classes for reading from and writing to streams/files in NeXML format.
|
info.bioinfweb.jphyloio.formats.pde |
Contains classes for reading from streams/files in PDE format.
|
info.bioinfweb.jphyloio.formats.phyloxml |
Contains classes for reading from and writing to streams/files in PhyloXML format.
|
info.bioinfweb.jphyloio.formats.xml |
Contains classes implementing shared functionality for reading from and writing to streams/files in XML formats.
|
info.bioinfweb.jphyloio.formats.xml.elementreaders |
Contains general (abstract) implementations of
XMLElementReader used by
readers of XML formats. |
info.bioinfweb.jphyloio.formats.xtg |
Contains classes for reading from and writing to streams/files in XTG format.
|
Modifier and Type | Class and Description |
---|---|
class |
NeXMLEventReader
An event reader for the NeXML format.
|
Modifier and Type | Class and Description |
---|---|
class |
PDEEventReader
Event reader for the PDE format used by the alignment editor PhyDE.
|
Modifier and Type | Class and Description |
---|---|
class |
PhyloXMLEventReader
Event reader for the PhyloXML format.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractXMLEventReader<P extends XMLReaderStreamDataProvider<? extends AbstractXMLEventReader<P>>>
Implements shared functionality for reading XML formats.
|
class |
XMLReaderStreamDataProvider<R extends AbstractXMLEventReader<? extends XMLReaderStreamDataProvider<R>>>
Stores data that shall be shared among different implementations of
XMLElementReader
reading from the same document. |
Modifier and Type | Class and Description |
---|---|
class |
AbstractXMLElementReader<P extends XMLReaderStreamDataProvider<? extends AbstractXMLEventReader<P>>>
Abstract implementation of an element reader that is used to process parts of an XML document.
|
class |
CommentElementReader<P extends XMLReaderStreamDataProvider<? extends AbstractXMLEventReader<P>>>
Element reader that is commonly used by
JPhyloIOXMLEventReader s to process comments. |
class |
StartDocumentElementReader<P extends XMLReaderStreamDataProvider<? extends AbstractXMLEventReader<P>>>
This element reader implements basic functionality for reading the start document event of an XML document.
|
interface |
XMLElementReader<P extends XMLReaderStreamDataProvider<? extends AbstractXMLEventReader<P>>>
This interface should be implemented by all element readers used to process XML formats.
|
Modifier and Type | Class and Description |
---|---|
class |
XTGEventReader
Event reader for the extensible TreeGraph 2 format (XTG) used by the
phylogenetic tree editor TreeGraph 2.
|