| Package | Description |
|---|---|
| info.bioinfweb.jphyloio.formats.nexml |
Contains classes for reading from and writing to streams/files in NeXML format.
|
| info.bioinfweb.jphyloio.formats.pde |
Contains classes for reading from streams/files in PDE format.
|
| info.bioinfweb.jphyloio.formats.phyloxml |
Contains classes for reading from and writing to streams/files in PhyloXML format.
|
| info.bioinfweb.jphyloio.formats.xml |
Contains classes implementing shared functionality for reading from and writing to streams/files in XML formats.
|
| info.bioinfweb.jphyloio.formats.xml.stax |
Contains implementations that allow StAX based reading and writing of XML metadata.
|
| info.bioinfweb.jphyloio.formats.xtg |
Contains classes for reading from and writing to streams/files in XTG format.
|
| Modifier and Type | Class and Description |
|---|---|
class |
NeXMLEventReader
An event reader for the NeXML format.
|
| Modifier and Type | Class and Description |
|---|---|
class |
PDEEventReader
Event reader for the PDE format used by the alignment editor PhyDE.
|
| Modifier and Type | Class and Description |
|---|---|
class |
PhyloXMLEventReader
Event reader for the PhyloXML format.
|
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractXMLEventReader<P extends XMLReaderStreamDataProvider<? extends AbstractXMLEventReader<P>>>
Implements shared functionality for reading XML formats.
|
| Modifier and Type | Method and Description |
|---|---|
protected JPhyloIOXMLEventReader |
AbstractMetaXMLReader.getJPhyloIOEventReader() |
| Modifier and Type | Class and Description |
|---|---|
class |
XTGEventReader
Event reader for the extensible TreeGraph 2 format (XTG) used by the
phylogenetic tree editor TreeGraph 2.
|