| Package | Description |
|---|---|
| info.bioinfweb.jphyloio |
The main package of JPhyloIO.
|
| info.bioinfweb.jphyloio.formats.newick |
Contains classes for reading from and writing to streams/files in Newick tree format.
|
| info.bioinfweb.jphyloio.formats.phyloxml |
Contains classes for reading from and writing to streams/files in PhyloXML format.
|
| info.bioinfweb.jphyloio.formats.phyloxml.receivers |
Contains implementations for
JPhyloIOEventReceiver necessary for writing
PhyloXML. |
| info.bioinfweb.jphyloio.objecttranslation |
Contains classes used by readers and writers that convert between (complex) Java objects and their text or XML representation.
|
| info.bioinfweb.jphyloio.objecttranslation.implementations |
Contains implementations of
ObjectTranslator. |
| Class and Description |
|---|
| ObjectTranslatorFactory
Factory to create instances of
ObjectTranslator to be used with readers and writers of JPhyloIO to read
and write literal metadata objects. |
| Class and Description |
|---|
| InvalidObjectSourceDataException
Exception that indicates that an an instance of
ObjectTranslator was not able to use the provided source data
(string or XML events) to create an instance of the handled object type (e.g. |
| Class and Description |
|---|
| InvalidObjectSourceDataException
Exception that indicates that an an instance of
ObjectTranslator was not able to use the provided source data
(string or XML events) to create an instance of the handled object type (e.g. |
| ObjectTranslator
Classes implementing this interface are able to convert between Java Objects and their text or XML representation.
|
| Class and Description |
|---|
| ObjectTranslator
Classes implementing this interface are able to convert between Java Objects and their text or XML representation.
|
| Class and Description |
|---|
| InvalidObjectSourceDataException
Exception that indicates that an an instance of
ObjectTranslator was not able to use the provided source data
(string or XML events) to create an instance of the handled object type (e.g. |
| ObjectTranslator
Classes implementing this interface are able to convert between Java Objects and their text or XML representation.
|
| Class and Description |
|---|
| InvalidObjectSourceDataException
Exception that indicates that an an instance of
ObjectTranslator was not able to use the provided source data
(string or XML events) to create an instance of the handled object type (e.g. |
| ObjectTranslator
Classes implementing this interface are able to convert between Java Objects and their text or XML representation.
|