info.bioinfweb.jphyloio.utils

Class TreeTopologyExtractor

java.lang.Object

info.bioinfweb.jphyloio.utils.TreeTopologyExtractor

public class TreeTopologyExtractor
extends java.lang.Object

Tool class that allows to determine a tree topology from a TreeNetworkDataAdapter. It is useful for implementations of JPhyloIOEventWriter for formats with a hierarchical tree representation (e.g. Newick or PhyloXML).

Author:

Sarah Wiechers, Ben Stöver

Constructor Summary

Constructors

Constructor and Description
TreeTopologyExtractor(TreeNetworkDataAdapter adapter, ReadWriteParameterMap parameters)

Method Summary

Modifier and Type	Method and Description
java.util.Map<java.lang.String,TopoplogicalNodeInfo>	getIDToNodeInfoMap()
java.util.Set<java.lang.String>	getNetworkEdgeIDs()
java.lang.String	getPaintStartID()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TreeTopologyExtractor

public TreeTopologyExtractor(TreeNetworkDataAdapter adapter,
                             ReadWriteParameterMap parameters)

Method Detail

getIDToNodeInfoMap

public java.util.Map<java.lang.String,TopoplogicalNodeInfo> getIDToNodeInfoMap()

getPaintStartID

public java.lang.String getPaintStartID()

getNetworkEdgeIDs

public java.util.Set<java.lang.String> getNetworkEdgeIDs()