| Class | Description |
|---|---|
| IDToNameManager |
Allows to assign IDs to labels, without having multiple IDs for the same label.
|
| JPhyloIOReadingUtils |
Provides tool methods to be used by application developers when implementing a reader class that processes
events from an implementations of
JPhyloIOEventReader and stores relevant content in the application
business model. |
| JPhyloIOWritingUtils | |
| LabelEditingReporter |
Data storage class that allows instances of
JPhyloIOEventWriter to give feedback to the application
on how labels of different elements (e.g. |
| SequenceTokensEventManager |
Class used by implementations of
JPhyloIOEventReader to keep track of the current alignment
position and replacing match tokens by the according tokens from the first sequence. |
| TopoplogicalNodeInfo |
This class is used by
TreeTopologyExtractor to model a node in a phylogenetic tree or network. |
| TreeTopologyExtractor |
Tool class that allows to determine a tree topology from a
TreeNetworkDataAdapter. |
| Enum | Description |
|---|---|
| LabelEditingReporter.LabelStatus |
Enumerates the possible cases of how the label associated with a data element was treated by an
instance of
JPhyloIOEventWriter. |