| Package | Description |
|---|---|
| info.bioinfweb.libralign.alignmentarea |
Contains basic implementations for displaying an alignment area.
|
| info.bioinfweb.libralign.alignmentarea.content |
Contains classes related to
AlignmentContentArea which display
the contents of an alignment. |
| info.bioinfweb.libralign.dataarea |
Contains
DataArea from which all data areas used in LibrAlign
must be inherited as well as related classes and a set of general data area implementations provided with
LibrAlign which are located in the subpackage implementations. |
| info.bioinfweb.libralign.dataarea.implementations |
Contains classes that implement a concrete data area.
|
| info.bioinfweb.libralign.dataarea.implementations.charset |
Contains data area related classes to display character sets of an alignment.
|
| info.bioinfweb.libralign.dataarea.implementations.pherogram |
Contains
PherogramArea and other classes used in its
implementation. |
| info.bioinfweb.libralign.dataarea.implementations.sequenceindex |
| Modifier and Type | Method and Description |
|---|---|
AlignmentContentArea |
AlignmentArea.getContentArea()
Returns the alignment content area used internally by this instance.
|
| Modifier and Type | Method and Description |
|---|---|
AlignmentContentArea |
ScrollContainerSwingAlignmentContentArea.getIndependentComponent() |
AlignmentContentArea |
ScrollContainerSWTAlignmentContentArea.getIndependentComponent() |
AlignmentContentArea |
AlignmentSubArea.getOwner()
Returns the alignment content area that displays this data area.
|
AlignmentContentArea |
InputEventForwarder.getOwner() |
AlignmentContentArea |
SequenceAreaMap.getOwner() |
| Constructor and Description |
|---|
AlignmentSubArea(AlignmentContentArea owner)
Creates a new instance of this class.
|
InputEventForwarder(AlignmentContentArea owner) |
ScrollContainerSwingAlignmentContentArea(AlignmentContentArea independentComponent) |
ScrollContainerSWTAlignmentContentArea(AlignmentContentArea independentComponent,
org.eclipse.swt.widgets.Composite parentComposite,
int style) |
SequenceArea(AlignmentContentArea owner,
java.lang.String sequenceID)
Creates a new instance of this class.
|
SequenceAreaMap(AlignmentContentArea owner) |
| Constructor and Description |
|---|
DataArea(AlignmentContentArea owner,
AlignmentArea labeledArea)
Creates a new instance of this class.
|
| Constructor and Description |
|---|
ConsensusSequenceArea(AlignmentContentArea owner)
Creates a new instance of this class that uses the sequence data provider of the specified
alignment area.
|
ConsensusSequenceArea(AlignmentContentArea owner,
AlignmentArea labeledAlignmentArea)
Creates a new instance of this class that uses the specified sequence data provider.
|
LabelDataArea(AlignmentContentArea owner,
AlignmentArea labeledArea) |
LabelDataArea(AlignmentContentArea owner,
AlignmentArea labeledArea,
java.lang.String text) |
LabelDataArea(AlignmentContentArea owner,
AlignmentArea labeledArea,
java.lang.String text,
boolean alignToFirstColumn,
boolean alignToScrollPosition) |
| Constructor and Description |
|---|
CharSetArea(AlignmentContentArea owner,
AlignmentArea labeledAlignmentArea)
Creates a new instance of this class with an empty data model.
|
CharSetArea(AlignmentContentArea owner,
AlignmentArea labeledAlignmentArea,
CharSetDataModel model)
Creates a new instance of this class.
|
| Constructor and Description |
|---|
PherogramArea(AlignmentContentArea owner,
PherogramAreaModel model)
Creates a new instance of this class.
|
| Constructor and Description |
|---|
SequenceIndexArea(AlignmentContentArea owner)
Creates a new instance of this class using the parent alignment area of
owner as the labeled area. |
SequenceIndexArea(AlignmentContentArea owner,
AlignmentArea labeledArea)
Creates a new instance of this class.
|