Uses of Class
info.bioinfweb.libralign.alignmentarea.order.SequenceOrder

Packages that use SequenceOrder

Package	Description
info.bioinfweb.libralign.alignmentarea	Contains basic implementations for displaying an alignment area.
info.bioinfweb.libralign.model.adapters	Contains adapter classes that allow to access the data provided by BasicAlignmentModelView in other ways (e.g.

Uses of SequenceOrder in info.bioinfweb.libralign.alignmentarea

Methods in info.bioinfweb.libralign.alignmentarea that return SequenceOrder

Modifier and Type	Method and Description
SequenceOrder	AlignmentArea.getSequenceOrder() Returns the sequence order object the determines the order in which the sequences of the associated alignment model are displayed in this instance.

Uses of SequenceOrder in info.bioinfweb.libralign.model.adapters

Methods in info.bioinfweb.libralign.model.adapters with parameters of type SequenceOrder

Modifier and Type	Method and Description
org.biojava3.core.sequence.template.LightweightProfile<org.biojava3.core.sequence.template.Sequence<C>,C>	BioJava3SequenceAdapter.toLightweightProfile(SequenceOrder order) Returns a BioJava alignment that contains the views of all sequences contained in the underlying data source in the order specified in the order object.