Uses of Interface
info.bioinfweb.libralign.model.SequenceAccess

Packages that use SequenceAccess

Package	Description
info.bioinfweb.libralign.model	Contains the AlignmentModel interface which is the bridge between LibrAlign and any source of alignment data that is displayed with it as well as related classes and a set of implementations of this interface provided with LibrAlign.
info.bioinfweb.libralign.model.adapters	Contains adapter classes that allow to access the data provided by BasicAlignmentModelView in other ways (e.g.
info.bioinfweb.libralign.model.implementations	Contains common implementations of AlignmentModel which are part of LibrAlign.

Uses of SequenceAccess in info.bioinfweb.libralign.model

Subinterfaces of SequenceAccess in info.bioinfweb.libralign.model

Modifier and Type	Interface and Description
interface	SequenceAccessAlignmentModel<S,T> Interface for classes implementing AlignmentModel by using sequence objects.

Uses of SequenceAccess in info.bioinfweb.libralign.model.adapters

Subinterfaces of SequenceAccess in info.bioinfweb.libralign.model.adapters

Modifier and Type	Interface and Description
interface	SequenceDataAdapter<S,T> Classes implementing this interface provide access to the data provided by an implementation of AlignmentModel in a different way (e.g.

Classes in info.bioinfweb.libralign.model.adapters that implement SequenceAccess

Modifier and Type	Class and Description
class	BioJava3SequenceAdapter<T,C extends org.biojava3.core.sequence.template.Compound> Adapter class that allows to access the contents of an implementation of AlignmentModel as a set of BioJava Sequence objects.
class	CharSequenceAdapter<T> Adapter class that allows to access the contents of an implementation of AlignmentModel as a set of CharSequences or Strings.
class	StringAdapter<T> Returns the sequences contained in the underlying data source as strings.

Uses of SequenceAccess in info.bioinfweb.libralign.model.implementations

Classes in info.bioinfweb.libralign.model.implementations that implement SequenceAccess

Modifier and Type	Class and Description
class	AbstractUnmodifyableAlignmentModel<S,T> Implements basic functionality for a map based alignment model that uses unmodifiable sequence objects as its underlying data source.
class	BioJava3SequenceAlignmentModel<S extends org.biojava3.core.sequence.template.Sequence<C>,C extends org.biojava3.core.sequence.template.Compound> /** An implementation of AlignmentModel backed by a set of BioJava Sequence implementations.
class	CharSequenceAlignmentModel An implementation of AlignmentModel backed by a set of CharSequence implementations (e.g.