Uses of Class
info.bioinfweb.libralign.model.exception.AlignmentSourceNotWritableException

Packages that use AlignmentSourceNotWritableException

Package	Description
info.bioinfweb.libralign.model	Contains the AlignmentModel interface which is the bridge between LibrAlign and any source of alignment data that is displayed with it as well as related classes and a set of implementations of this interface provided with LibrAlign.
info.bioinfweb.libralign.model.implementations	Contains common implementations of AlignmentModel which are part of LibrAlign.
info.bioinfweb.libralign.model.implementations.decorate
info.bioinfweb.libralign.model.implementations.swingundo	Contains classes that allow to edit the underlying data source of an implementation of AlignmentModel using swing edit objects (implementations of UndoableEdit).

Uses of AlignmentSourceNotWritableException in info.bioinfweb.libralign.model

Methods in info.bioinfweb.libralign.model that throw AlignmentSourceNotWritableException

Modifier and Type	Method and Description
java.lang.String	AlignmentModel.addSequence(java.lang.String sequenceName) Adds a new empty sequence to the underlying data source and generates an ID for it.
java.lang.String	SequenceAccessAlignmentModel.addSequence(java.lang.String sequenceName, S content) Adds a the specified sequence to the underlying data source and generates an ID for it.
java.lang.String	AlignmentModel.addSequence(java.lang.String sequenceName, java.lang.String sequenceID) Adds a new empty sequence to the underlying data source assigning the specified ID to it.
void	AlignmentModel.appendToken(java.lang.String sequenceID, T token) Appends a token at the end of the sequence.
void	AlignmentModel.appendTokens(java.lang.String sequenceID, java.util.Collection<? extends T> tokens) Appends a sequence of tokens starting at the end of the current sequence.
void	AlignmentModel.insertTokenAt(java.lang.String sequenceID, int index, T token) Inserts a token at the specified position.
void	AlignmentModel.insertTokensAt(java.lang.String sequenceID, int beginIndex, java.util.Collection<? extends T> tokens) Inserts a sequence of tokens starting at the specified position.
boolean	AlignmentModel.removeSequence(java.lang.String sequenceID) Removes the specified sequence from the underlying data source.
void	AlignmentModel.removeTokenAt(java.lang.String sequenceID, int index) Removes the token at the specified position from the underlying data source.
void	AlignmentModel.removeTokensAt(java.lang.String sequenceID, int beginIndex, int endIndex) Removes the token inside the specified interval from the underlying data source.
java.lang.String	AlignmentModel.renameSequence(java.lang.String sequenceID, java.lang.String newSequenceName) Renames a sequence in the underlying data source.
S	SequenceAccessAlignmentModel.replaceSequence(java.lang.String sequenceID, S content) Replaces the sequence object with the specified ID.
void	AlignmentModel.setTokenAt(java.lang.String sequenceID, int index, T token) Replaces the token at the specified position by the passed token.
void	AlignmentModel.setTokensAt(java.lang.String sequenceID, int beginIndex, java.util.Collection<? extends T> tokens) Replaces a sequence of tokens starting at the specified position.

Uses of AlignmentSourceNotWritableException in info.bioinfweb.libralign.model.implementations

Methods in info.bioinfweb.libralign.model.implementations that throw AlignmentSourceNotWritableException

Modifier and Type	Method and Description
java.lang.String	AbstractUndecoratedAlignmentModel.addSequence(java.lang.String sequenceName, java.lang.String sequenceID)
void	AbstractUndecoratedAlignmentModel.appendToken(java.lang.String sequenceID, T token)
void	AbstractUndecoratedAlignmentModel.appendTokens(java.lang.String sequenceID, java.util.Collection<? extends T> tokens)
void	AbstractListAlignmentModel.insertTokenAt(java.lang.String sequenceID, int index, T token)
void	AbstractUnmodifyableAlignmentModel.insertTokenAt(java.lang.String sequenceID, int index, T token)
void	AbstractListAlignmentModel.insertTokensAt(java.lang.String sequenceID, int beginIndex, java.util.Collection<? extends T> tokens)
void	AbstractUnmodifyableAlignmentModel.insertTokensAt(java.lang.String sequenceID, int beginIndex, java.util.Collection<? extends T> tokens)
void	AbstractListAlignmentModel.removeTokenAt(java.lang.String sequenceID, int index)
void	AbstractUnmodifyableAlignmentModel.removeTokenAt(java.lang.String sequenceID, int index)
void	AbstractListAlignmentModel.removeTokensAt(java.lang.String sequenceID, int beginIndex, int endIndex)
void	AbstractUnmodifyableAlignmentModel.removeTokensAt(java.lang.String sequenceID, int beginIndex, int endIndex)
void	AbstractListAlignmentModel.setTokenAt(java.lang.String sequenceID, int index, T token)
void	AbstractUnmodifyableAlignmentModel.setTokenAt(java.lang.String sequenceID, int index, T token)
void	AbstractListAlignmentModel.setTokensAt(java.lang.String sequenceID, int beginIndex, java.util.Collection<? extends T> tokens)
void	AbstractUnmodifyableAlignmentModel.setTokensAt(java.lang.String sequenceID, int beginIndex, java.util.Collection<? extends T> tokens)

Uses of AlignmentSourceNotWritableException in info.bioinfweb.libralign.model.implementations.decorate

Methods in info.bioinfweb.libralign.model.implementations.decorate that throw AlignmentSourceNotWritableException

Modifier and Type	Method and Description
java.lang.String	AbstractAlignmentModelDecorator.addSequence(java.lang.String sequenceName)
java.lang.String	DelegatedAlignmentModelView.addSequence(java.lang.String sequenceName)
java.lang.String	AbstractAlignmentModelDecorator.addSequence(java.lang.String sequenceName, java.lang.String sequenceID)
java.lang.String	DelegatedAlignmentModelView.addSequence(java.lang.String sequenceName, java.lang.String sequenceID)
void	AbstractTokenReplacementAlignmentModelDecorator.appendToken(java.lang.String sequenceID, T token)
void	DelegatedAlignmentModelView.appendToken(java.lang.String sequenceID, T token)
void	AbstractTokenReplacementAlignmentModelDecorator.appendTokens(java.lang.String sequenceID, java.util.Collection<? extends T> tokens)
void	DelegatedAlignmentModelView.appendTokens(java.lang.String sequenceID, java.util.Collection<? extends T> tokens)
void	AbstractTokenReplacementAlignmentModelDecorator.insertTokenAt(java.lang.String sequenceID, int index, T token)
void	DelegatedAlignmentModelView.insertTokenAt(java.lang.String sequenceID, int index, T token)
void	AbstractTokenReplacementAlignmentModelDecorator.insertTokensAt(java.lang.String sequenceID, int beginIndex, java.util.Collection<? extends T> tokens)
void	DelegatedAlignmentModelView.insertTokensAt(java.lang.String sequenceID, int beginIndex, java.util.Collection<? extends T> tokens)
boolean	AbstractAlignmentModelDecorator.removeSequence(java.lang.String sequenceID)
boolean	DelegatedAlignmentModelView.removeSequence(java.lang.String sequenceID)
void	AbstractTokenReplacementAlignmentModelDecorator.removeTokenAt(java.lang.String sequenceID, int index)
void	DelegatedAlignmentModelView.removeTokenAt(java.lang.String sequenceID, int index)
void	AbstractTokenReplacementAlignmentModelDecorator.removeTokensAt(java.lang.String sequenceID, int beginIndex, int endIndex)
void	DelegatedAlignmentModelView.removeTokensAt(java.lang.String sequenceID, int beginIndex, int endIndex)
java.lang.String	AbstractTokenReplacementAlignmentModelDecorator.renameSequence(java.lang.String sequenceID, java.lang.String newSequenceName)
java.lang.String	DelegatedAlignmentModelView.renameSequence(java.lang.String sequenceID, java.lang.String newSequenceName)
void	AbstractTokenReplacementAlignmentModelDecorator.setTokenAt(java.lang.String sequenceID, int index, T token)
void	DelegatedAlignmentModelView.setTokenAt(java.lang.String sequenceID, int index, T token)
void	AbstractTokenReplacementAlignmentModelDecorator.setTokensAt(java.lang.String sequenceID, int beginIndex, java.util.Collection<? extends T> tokens)
void	DelegatedAlignmentModelView.setTokensAt(java.lang.String sequenceID, int beginIndex, java.util.Collection<? extends T> tokens)

Uses of AlignmentSourceNotWritableException in info.bioinfweb.libralign.model.implementations.swingundo

Methods in info.bioinfweb.libralign.model.implementations.swingundo that throw AlignmentSourceNotWritableException

Modifier and Type	Method and Description
void	SwingUndoAlignmentModel.appendToken(java.lang.String sequenceID, T token)
void	SwingUndoAlignmentModel.appendTokens(java.lang.String sequenceID, java.util.Collection<? extends T> tokens)
void	SwingUndoAlignmentModel.insertTokenAt(java.lang.String sequenceID, int index, T token)
void	SwingUndoAlignmentModel.insertTokensAt(java.lang.String sequenceID, int beginIndex, java.util.Collection<? extends T> tokens)
void	SwingUndoAlignmentModel.removeTokenAt(java.lang.String sequenceID, int index)
void	SwingUndoAlignmentModel.removeTokensAt(java.lang.String sequenceID, int beginIndex, int endIndex)
void	SwingUndoAlignmentModel.setTokenAt(java.lang.String sequenceID, int index, T token)
void	SwingUndoAlignmentModel.setTokensAt(java.lang.String sequenceID, int beginIndex, java.util.Collection<? extends T> tokens)