Uses of Class
info.bioinfweb.libralign.model.factory.NewAlignmentModelParameterMap

Packages that use NewAlignmentModelParameterMap

Package	Description
info.bioinfweb.libralign.model.factory	Contains factory classes to create instances of implementations of AlignmentModel.
info.bioinfweb.libralign.model.factory.biojava	Contains alignment models working with BioJava Compounds.
info.bioinfweb.libralign.model.factory.continuous	Contains factories for alignment models that work with continuous values (e.g.

Uses of NewAlignmentModelParameterMap in info.bioinfweb.libralign.model.factory

Methods in info.bioinfweb.libralign.model.factory with parameters of type NewAlignmentModelParameterMap

Modifier and Type	Method and Description
AlignmentModel<T>	AbstractAlignmentModelFactory.createNewModel(NewAlignmentModelParameterMap parameterMap)
AlignmentModel<T>	AlignmentModelFactory.createNewModel(NewAlignmentModelParameterMap parameterMap) Creates a new instance of an alignment model according to the specified parameters.
AlignmentModel<java.lang.String>	StringAlignmentModelFactory.createNewModel(NewAlignmentModelParameterMap parameterMap) Creates a new instance of PackedAlignmentModel if the number of tokens is specified (using KEY_CHARACTER_STATE_COUNT) or ArrayListAlignmentModel if not.
protected abstract AlignmentModel<T>	AbstractAlignmentModelFactory.doCreateNewModel(NewAlignmentModelParameterMap parameterMap)
AlignmentModel<java.lang.Character>	BioPolymerCharAlignmentModelFactory.doCreateNewModel(NewAlignmentModelParameterMap parameterMap)

Uses of NewAlignmentModelParameterMap in info.bioinfweb.libralign.model.factory.biojava

Methods in info.bioinfweb.libralign.model.factory.biojava with parameters of type NewAlignmentModelParameterMap

Modifier and Type	Method and Description
AlignmentModel<org.biojava3.core.sequence.compound.AminoAcidCompound>	BioJava3AminoAcidAligmentModelFactory.createNewModel(NewAlignmentModelParameterMap parameterMap)
AlignmentModel<org.biojava3.core.sequence.compound.NucleotideCompound>	BioJava3NucleotideAlignmentModelFactory.createNewModel(NewAlignmentModelParameterMap parameterMap)

Uses of NewAlignmentModelParameterMap in info.bioinfweb.libralign.model.factory.continuous

Methods in info.bioinfweb.libralign.model.factory.continuous with parameters of type NewAlignmentModelParameterMap

Modifier and Type	Method and Description
AlignmentModel<ContinuousToken<java.lang.Double>>	DoubleAlignmentModelFactory.doCreateNewModel(NewAlignmentModelParameterMap parameterMap)
AlignmentModel<ContinuousToken<java.lang.Float>>	FloatAlignmentModelFactory.doCreateNewModel(NewAlignmentModelParameterMap parameterMap)