| Package | Description |
|---|---|
| info.bioinfweb.libralign.alignmentarea.tokenpainter |
Contains implementations of
TokenPainter |
| info.bioinfweb.libralign.model |
Contains the
AlignmentModel interface which
is the bridge between LibrAlign and any source of alignment data that is displayed with it as well as
related classes and a set of implementations of this interface provided with LibrAlign. |
| info.bioinfweb.libralign.model.exception |
Contains exceptions thrown by implementations of
AlignmentModel. |
| info.bioinfweb.libralign.model.implementations |
Contains common implementations of
AlignmentModel
which are part of LibrAlign. |
| info.bioinfweb.libralign.model.implementations.decorate | |
| info.bioinfweb.libralign.model.implementations.swingundo |
Contains classes that allow to edit the underlying data source of an implementation of
AlignmentModel using swing edit objects
(implementations of UndoableEdit). |
| info.bioinfweb.libralign.model.io | |
| info.bioinfweb.libralign.model.tokenset | |
| info.bioinfweb.libralign.model.tokenset.continuous |
Contains classes implementing token sets for continuous character states (e.g.
|
| info.bioinfweb.libralign.model.utils |
Contains utility classes to be used with implementations of
AlignmentModel. |
| Class and Description |
|---|
| TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
| Class and Description |
|---|
| TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
| Class and Description |
|---|
| TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
| Class and Description |
|---|
| TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
| Class and Description |
|---|
| TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
| Class and Description |
|---|
| TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
| Class and Description |
|---|
| TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
| Class and Description |
|---|
| AbstractTokenSet
An abstract implementation of
TokenSet that provides a TreeMap used to map key characters
to tokens and inherits from HashSet so also tokens that do not implement Comparable are
supported. |
| BioJava3TokenSet
Implementation of
TokenSet backed by a BioJava CompoundSet object. |
| CharacterTokenSet
A token set consisting of characters.
|
| DefaultTokenSet
Basic implementation of a discrete token set.
|
| TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
| Class and Description |
|---|
| TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
| Class and Description |
|---|
| TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|