Package | Description |
---|---|
info.bioinfweb.libralign.alignmentarea.tokenpainter |
Contains implementations of
TokenPainter |
info.bioinfweb.libralign.model |
Contains the
AlignmentModel interface which
is the bridge between LibrAlign and any source of alignment data that is displayed with it as well as
related classes and a set of implementations of this interface provided with LibrAlign. |
info.bioinfweb.libralign.model.exception |
Contains exceptions thrown by implementations of
AlignmentModel . |
info.bioinfweb.libralign.model.implementations |
Contains common implementations of
AlignmentModel
which are part of LibrAlign. |
info.bioinfweb.libralign.model.implementations.decorate | |
info.bioinfweb.libralign.model.implementations.swingundo |
Contains classes that allow to edit the underlying data source of an implementation of
AlignmentModel using swing edit objects
(implementations of UndoableEdit ). |
info.bioinfweb.libralign.model.io | |
info.bioinfweb.libralign.model.tokenset | |
info.bioinfweb.libralign.model.tokenset.continuous |
Contains classes implementing token sets for continuous character states (e.g.
|
info.bioinfweb.libralign.model.utils |
Contains utility classes to be used with implementations of
AlignmentModel . |
Class and Description |
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TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
Class and Description |
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TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
Class and Description |
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TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
Class and Description |
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TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
Class and Description |
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TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
Class and Description |
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TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
Class and Description |
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TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
Class and Description |
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AbstractTokenSet
An abstract implementation of
TokenSet that provides a TreeMap used to map key characters
to tokens and inherits from HashSet so also tokens that do not implement Comparable are
supported. |
BioJava3TokenSet
Implementation of
TokenSet backed by a BioJava CompoundSet object. |
CharacterTokenSet
A token set consisting of characters.
|
DefaultTokenSet
Basic implementation of a discrete token set.
|
TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
Class and Description |
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TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|
Class and Description |
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TokenSet
This interface should be implemented by all classes specifying a set of tokens (sequence elements, e.g.
|