Uses of Class
info.bioinfweb.libralign.model.utils.indextranslation.IndexRelation

Packages that use IndexRelation

Package	Description
info.bioinfweb.libralign.model.utils.indextranslation
info.bioinfweb.libralign.pherogram.model	Contains PherogramProvider and its implementations.

Uses of IndexRelation in info.bioinfweb.libralign.model.utils.indextranslation

Methods in info.bioinfweb.libralign.model.utils.indextranslation that return IndexRelation

Modifier and Type	Method and Description
abstract IndexRelation	AbstractIndexTranslator.getUnalignedIndex(java.lang.String sequenceID, int alignedIndex)
IndexRelation	IndexTranslator.getUnalignedIndex(java.lang.String sequenceID, int alignedIndex) Returns the index of the sequence token at the specified alignment column.
IndexRelation	RandomAccessIndexTranslator.getUnalignedIndex(java.lang.String sequenceID, int alignedIndex)

Uses of IndexRelation in info.bioinfweb.libralign.pherogram.model

Subclasses of IndexRelation in info.bioinfweb.libralign.pherogram.model

Modifier and Type	Class and Description
class	PherogramAlignmentRelation A bean class storing the base call sequence position corresponding to editable sequence position or the other way around in an alignment between the base call sequence from Sanger sequencing and the corresponding editable sequence in an AlignmentArea.