Uses of Class
info.bioinfweb.libralign.pherogram.model.PherogramAlignmentRelation

Packages that use PherogramAlignmentRelation

Package	Description
info.bioinfweb.libralign.pherogram.model	Contains PherogramProvider and its implementations.

Uses of PherogramAlignmentRelation in info.bioinfweb.libralign.pherogram.model

Methods in info.bioinfweb.libralign.pherogram.model that return PherogramAlignmentRelation

Modifier and Type	Method and Description
PherogramAlignmentRelation	PherogramAreaModel.baseCallIndexByEditableIndex(int editableIndex)
PherogramAlignmentRelation	PherogramAreaModel.editableIndexByBaseCallIndex(int baseCallIndex) Returns the index in the editable alignment sequence that corresponds to the specified index in the base call sequence.
protected PherogramAlignmentRelation	PherogramAreaModel.getAlignmentRelation(int baseCallIndex)
protected PherogramAlignmentRelation	PherogramComponentModel.getAlignmentRelation(int baseCallIndex)
PherogramAlignmentRelation	PherogramCutPositionChangeEvent.getNewEditableIndex() The relation to the index of the right cut position in the editable sequence associated with the # displaying PherogramArea.
PherogramAlignmentRelation	PherogramCutPositionChangeEvent.getOldEditableIndex() The relation to the index of the left cut position in the editable sequence associated with the displaying PherogramArea.

Methods in info.bioinfweb.libralign.pherogram.model with parameters of type PherogramAlignmentRelation

Modifier and Type	Method and Description
protected void	PherogramComponentModel.fireLeftCutPositionChanged(int oldValue, PherogramAlignmentRelation oldEditableIndex, boolean moreEventsUpcoming)
protected void	PherogramComponentModel.fireRightCutPositionChanged(int oldValue, PherogramAlignmentRelation oldEditableIndex, boolean moreEventsUpcoming)

Constructors in info.bioinfweb.libralign.pherogram.model with parameters of type PherogramAlignmentRelation

Constructor and Description
PherogramCutPositionChangeEvent(PherogramComponentModel source, boolean moreEventsUpcoming, int oldBaseCallIndex, int newBaseCallIndex, PherogramAlignmentRelation oldEditableIndex, PherogramAlignmentRelation newEditableIndex) Creates a new instance of this class.