Uses of Interface
info.bioinfweb.jphyloio.dataadapters.ElementDataAdapter

Packages that use ElementDataAdapter

Package	Description
info.bioinfweb.jphyloio	The main package of JPhyloIO.
info.bioinfweb.jphyloio.dataadapters	Contains adapter interfaces that should be implemented by adapters mediating between the business model of an application and implementations of JPhyloIOEventWriter.
info.bioinfweb.jphyloio.dataadapters.implementations	Contains some basic (abstract) implementations of JPhyloIOEventWriter.
info.bioinfweb.jphyloio.dataadapters.implementations.store	Contains implementations of data adapters that directly store their modeled data in mutable lists or maps instead of delegating to an application business model.
info.bioinfweb.jphyloio.formats.nexus	Contains classes for reading from and writing to streams/files in Nexus format.

Uses of ElementDataAdapter in info.bioinfweb.jphyloio

Methods in info.bioinfweb.jphyloio with parameters of type ElementDataAdapter

Modifier and Type	Method and Description
static OTUListDataAdapter	AbstractEventWriter.getReferencedOTUList(DocumentDataAdapter document, ElementDataAdapter<LinkedLabeledIDEvent> source, ReadWriteParameterMap parameters) Returns the OTU list found in document which is referenced by the specified event.

Uses of ElementDataAdapter in info.bioinfweb.jphyloio.dataadapters

Subinterfaces of ElementDataAdapter in info.bioinfweb.jphyloio.dataadapters

Modifier and Type	Interface and Description
interface	MatrixDataAdapter Adapter interface used to provide any type of character matrix data to instances of JPhyloIOEventWriter, including token and character set definitions related to this matrix.
interface	OTUListDataAdapter Allows to access data from the application business model that make up an OTU list.
interface	TreeNetworkDataAdapter Data adapter interface that provides data for a tree or a network.
interface	TreeNetworkGroupDataAdapter

Uses of ElementDataAdapter in info.bioinfweb.jphyloio.dataadapters.implementations

Classes in info.bioinfweb.jphyloio.dataadapters.implementations that implement ElementDataAdapter

Modifier and Type	Class and Description
class	NoCharDefsNoSetsMatrixDataAdapter Abstract implementation of MatrixDataAdapter, which returns empty object list adapters for NoCharDefsNoSetsMatrixDataAdapter.getCharacterDefinitions(ReadWriteParameterMap), NoCharDefsNoSetsMatrixDataAdapter.getTokenSets(ReadWriteParameterMap), NoCharDefsNoSetsMatrixDataAdapter.getSequenceSets(ReadWriteParameterMap), NoCharDefsNoSetsMatrixDataAdapter.getCharacterSets(ReadWriteParameterMap).
class	NoSetsTreeNetworkDataAdapter Abstract implementation of TreeNetworkDataAdapter, which returns an empty object list adapter for NoSetsTreeNetworkDataAdapter.getNodeEdgeSets(ReadWriteParameterMap).
class	NoSetsTreeNetworkGroupDataAdapter Abstract implementation of TreeNetworkGroupDataAdapter, which returns an empty object list adapter for NoSetsTreeNetworkGroupDataAdapter.getTreeSets(ReadWriteParameterMap).
class	UndefinedOTUListDataAdapter

Uses of ElementDataAdapter in info.bioinfweb.jphyloio.dataadapters.implementations.store

Classes in info.bioinfweb.jphyloio.dataadapters.implementations.store that implement ElementDataAdapter

Modifier and Type	Class and Description
class	StoreMatrixDataAdapter
class	StoreOTUListDataAdapter
class	StoreTreeNetworkDataAdapter
class	StoreTreeNetworkGroupDataAdapter

Uses of ElementDataAdapter in info.bioinfweb.jphyloio.formats.nexus

Methods in info.bioinfweb.jphyloio.formats.nexus with parameters of type ElementDataAdapter

Modifier and Type	Method and Description
protected abstract java.lang.String	AbstractNexusSetWriter.getLinkedBlockName(ElementDataAdapter<? extends LabeledIDEvent> dataSource)
protected abstract ObjectListDataAdapter<LinkedLabeledIDEvent>	AbstractNexusSetWriter.getSets(ElementDataAdapter<? extends LabeledIDEvent> dataSource)

Constructor parameters in info.bioinfweb.jphyloio.formats.nexus with type arguments of type ElementDataAdapter

Constructor and Description
AbstractNexusSetWriter(NexusWriterStreamDataProvider streamDataProvider, java.lang.String commandName, EventContentType linkedContentType, java.util.Iterator<? extends ElementDataAdapter<? extends LabeledIDEvent>> dataSourceIterator, AbstractNexusEventReceiver receiver)