Uses of Class
info.bioinfweb.jphyloio.events.LabeledIDEvent

Packages that use LabeledIDEvent

Package	Description
info.bioinfweb.jphyloio	The main package of JPhyloIO.
info.bioinfweb.jphyloio.dataadapters.implementations	Contains some basic (abstract) implementations of JPhyloIOEventWriter.
info.bioinfweb.jphyloio.dataadapters.implementations.store	Contains implementations of data adapters that directly store their modeled data in mutable lists or maps instead of delegating to an application business model.
info.bioinfweb.jphyloio.events	Contains implementations of JPhyloIO events, triggered during event based parsing.
info.bioinfweb.jphyloio.events.meta	Contains event classes that model metadata, as well as related implementations.
info.bioinfweb.jphyloio.formats.nexml	Contains classes for reading from and writing to streams/files in NeXML format.
info.bioinfweb.jphyloio.formats.nexus	Contains classes for reading from and writing to streams/files in Nexus format.
info.bioinfweb.jphyloio.utils	Contains general tool classes of JPhyloIO.

Uses of LabeledIDEvent in info.bioinfweb.jphyloio

Methods in info.bioinfweb.jphyloio with parameters of type LabeledIDEvent

Modifier and Type	Method and Description
static java.lang.String	AbstractEventWriter.createUniqueLabel(ReadWriteParameterMap parameters, AbstractEventWriter.UniqueLabelHandler handler, LabeledIDEvent event)
static java.lang.String	AbstractEventWriter.createUniqueLabel(ReadWriteParameterMap parameters, LabeledIDEvent event)
static java.lang.String	AbstractEventWriter.getLabeledIDName(LabeledIDEvent event) Returns a name for the specified event.

Uses of LabeledIDEvent in info.bioinfweb.jphyloio.dataadapters.implementations

Methods in info.bioinfweb.jphyloio.dataadapters.implementations that return LabeledIDEvent

Modifier and Type	Method and Description
LabeledIDEvent	UndefinedOTUListDataAdapter.getObjectStartEvent(ReadWriteParameterMap parameters, java.lang.String id)
LabeledIDEvent	UndefinedOTUListDataAdapter.getStartEvent(ReadWriteParameterMap parameters)

Uses of LabeledIDEvent in info.bioinfweb.jphyloio.dataadapters.implementations.store

Classes in info.bioinfweb.jphyloio.dataadapters.implementations.store with type parameters of type LabeledIDEvent

Modifier and Type	Class and Description
class	StoreObjectListDataAdapter<E extends LabeledIDEvent>

Methods in info.bioinfweb.jphyloio.dataadapters.implementations.store that return LabeledIDEvent

Modifier and Type	Method and Description
LabeledIDEvent	StoreOTUListDataAdapter.getObjectStartEvent(ReadWriteParameterMap parameters, java.lang.String id)
LabeledIDEvent	StoreOTUListDataAdapter.getStartEvent(ReadWriteParameterMap parameters)
LabeledIDEvent	StoreTreeNetworkDataAdapter.getStartEvent(ReadWriteParameterMap parameters)

Methods in info.bioinfweb.jphyloio.dataadapters.implementations.store that return types with arguments of type LabeledIDEvent

Modifier and Type	Method and Description
StoreObjectListDataAdapter<LabeledIDEvent>	StoreOTUListDataAdapter.getOtus()

Methods in info.bioinfweb.jphyloio.dataadapters.implementations.store with parameters of type LabeledIDEvent

Modifier and Type	Method and Description
void	StoreOTUListDataAdapter.setListStartEvent(LabeledIDEvent listStartEvent)

Constructors in info.bioinfweb.jphyloio.dataadapters.implementations.store with parameters of type LabeledIDEvent

Constructor and Description
StoreOTUListDataAdapter(LabeledIDEvent listStartEvent, java.util.List<JPhyloIOEvent> annotations)
StoreTreeNetworkDataAdapter(LabeledIDEvent startEvent, boolean isTree, java.util.List<JPhyloIOEvent> annotations)

Uses of LabeledIDEvent in info.bioinfweb.jphyloio.events

Subclasses of LabeledIDEvent in info.bioinfweb.jphyloio.events

Modifier and Type	Class and Description
class	CharacterDefinitionEvent Event that indicates a defined character (alignment column).
class	EdgeEvent Event indicating an edge in a tree or network.
class	LinkedLabeledIDEvent Instances of this class model data elements with an ID and an optional label, that link another data element in a phylogenetic document.
class	NodeEvent Event indicating a node in a tree or network.
class	SingleTokenDefinitionEvent Event that indicates the definition of a single new valid token that could be contained in a sequence of the current alignment.
class	TokenSetDefinitionEvent Event that indicates that a (predefined) definition of a character state set was found in the parsed file.

Methods in info.bioinfweb.jphyloio.events that return LabeledIDEvent

Modifier and Type	Method and Description
LabeledIDEvent	ConcreteJPhyloIOEvent.asLabeledIDEvent()
LabeledIDEvent	JPhyloIOEvent.asLabeledIDEvent() Casts this event to a labeled ID event.

Uses of LabeledIDEvent in info.bioinfweb.jphyloio.events.meta

Subclasses of LabeledIDEvent in info.bioinfweb.jphyloio.events.meta

Modifier and Type	Class and Description
class	LiteralMetadataEvent Indicates that literal metadata is modeled at the current position of the document (event stream).
class	ResourceMetadataEvent Indicates that metadata linking a RDF resource has been encountered at the current position of the document.

Uses of LabeledIDEvent in info.bioinfweb.jphyloio.formats.nexml

Methods in info.bioinfweb.jphyloio.formats.nexml with parameters of type LabeledIDEvent

Modifier and Type	Method and Description
void	NeXMLWriterStreamDataProvider.writeLabeledIDAttributes(LabeledIDEvent event)
void	NeXMLWriterStreamDataProvider.writeLabeledIDAttributes(LabeledIDEvent event, java.lang.String about)

Uses of LabeledIDEvent in info.bioinfweb.jphyloio.formats.nexus

Method parameters in info.bioinfweb.jphyloio.formats.nexus with type arguments of type LabeledIDEvent

Modifier and Type	Method and Description
protected abstract java.lang.String	AbstractNexusSetWriter.getLinkedBlockName(ElementDataAdapter<? extends LabeledIDEvent> dataSource)
protected abstract ObjectListDataAdapter<LinkedLabeledIDEvent>	AbstractNexusSetWriter.getSets(ElementDataAdapter<? extends LabeledIDEvent> dataSource)

Constructor parameters in info.bioinfweb.jphyloio.formats.nexus with type arguments of type LabeledIDEvent

Constructor and Description
AbstractNexusSetWriter(NexusWriterStreamDataProvider streamDataProvider, java.lang.String commandName, EventContentType linkedContentType, java.util.Iterator<? extends ElementDataAdapter<? extends LabeledIDEvent>> dataSourceIterator, AbstractNexusEventReceiver receiver)

Uses of LabeledIDEvent in info.bioinfweb.jphyloio.utils

Methods in info.bioinfweb.jphyloio.utils with parameters of type LabeledIDEvent

Modifier and Type	Method and Description
void	LabelEditingReporter.addEdit(LabeledIDEvent event, java.lang.String label) Adds a new mapping from an element ID to the label used for it in the target document to this instance.
java.lang.String	LabelEditingReporter.getEditedLabel(LabeledIDEvent event) Returns the (edited) label associated with the specified data element.
LabelEditingReporter.LabelStatus	LabelEditingReporter.getLabelStatus(LabeledIDEvent event) Returns the status of the specified data element and its label.