Uses of Class
info.bioinfweb.jphyloio.events.type.EventContentType

Packages that use EventContentType

Package	Description
info.bioinfweb.jphyloio	The main package of JPhyloIO.
info.bioinfweb.jphyloio.events	Contains implementations of JPhyloIO events, triggered during event based parsing.
info.bioinfweb.jphyloio.events.type	Contains classes used to indentify the type of an JPhyloIO event.
info.bioinfweb.jphyloio.formatinfo	Contains JPhyloIOFormatInfo and related classes that describe a format supported by JPhyloIO.
info.bioinfweb.jphyloio.formats.nexml	Contains classes for reading from and writing to streams/files in NeXML format.
info.bioinfweb.jphyloio.formats.nexml.elementreader	Contains implementations of XMLElementReader used by NeXMLEventReader.
info.bioinfweb.jphyloio.formats.nexus	Contains classes for reading from and writing to streams/files in Nexus format.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets	Contains classes for reading Nexus commands in a SETS block.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees	Contains classes for reading Nexus commands in a TREES block.
info.bioinfweb.jphyloio.formats.nexus.receivers	Contains implementations of JPhyloIOEventReceiver used internally by NexusEventReader.
info.bioinfweb.jphyloio.push	Contains classes that allow push-parsing.
info.bioinfweb.jphyloio.utils	Contains general tool classes of JPhyloIO.

Uses of EventContentType in info.bioinfweb.jphyloio

Methods in info.bioinfweb.jphyloio that return EventContentType

Modifier and Type	Method and Description
EventContentType	ParentEventInformation.getDirectParentContentType()

Methods in info.bioinfweb.jphyloio with parameters of type EventContentType

Modifier and Type	Method and Description
boolean	ParentEventInformation.isParentSequence(EventContentType... types) Checks whether the current parent events have the specified content type(s).

Uses of EventContentType in info.bioinfweb.jphyloio.events

Methods in info.bioinfweb.jphyloio.events that return EventContentType

Modifier and Type	Method and Description
EventContentType	SetElementEvent.getLinkedObjectType() Returns the type of event that is linked to this set.

Methods in info.bioinfweb.jphyloio.events with parameters of type EventContentType

Modifier and Type	Method and Description
static ConcreteJPhyloIOEvent	ConcreteJPhyloIOEvent.createEndEvent(EventContentType contentType) Creates a new instance of this class with the topology type EventTopologyType.END-

Constructors in info.bioinfweb.jphyloio.events with parameters of type EventContentType

Constructor and Description
ConcreteJPhyloIOEvent(EventContentType contentType, EventTopologyType topologyType) Creates a new instance of this class.
ContinuedEvent(EventContentType contentType, boolean continuedInNextEvent) Returns a new instance of this class with the topology type EventTopologyType.SOLE.
LabeledEvent(EventContentType contentType, java.lang.String label)
LabeledIDEvent(EventContentType contentType, java.lang.String id, java.lang.String label) Creates a new instance of this class.
LinkedLabeledIDEvent(EventContentType contentType, java.lang.String id, java.lang.String label, java.lang.String linkedID) Creates a new instance of this class.
PartEndEvent(EventContentType contentType, boolean terminated) Creates a new instance of this class.
SetElementEvent(java.lang.String linkedID, EventContentType linkedObjectType) Creates a new instance of this class.

Uses of EventContentType in info.bioinfweb.jphyloio.events.type

Methods in info.bioinfweb.jphyloio.events.type that return EventContentType

Modifier and Type	Method and Description
EventContentType	EventType.getContentType()
static EventContentType	EventContentType.valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static EventContentType[]	EventContentType.values() Returns an array containing the constants of this enum type, in the order they are declared.

Constructors in info.bioinfweb.jphyloio.events.type with parameters of type EventContentType

Constructor and Description
EventType(EventContentType contentType, EventTopologyType topologyType) Creates a new instance of this class.

Uses of EventContentType in info.bioinfweb.jphyloio.formatinfo

Methods in info.bioinfweb.jphyloio.formatinfo with parameters of type EventContentType

Modifier and Type	Method and Description
MetadataModeling	DefaultFormatInfo.getMetadataModeling(EventContentType parentContentType, boolean forReading)
MetadataModeling	JPhyloIOFormatInfo.getMetadataModeling(EventContentType parentContentType, boolean forReading) Determines which kind of metadata the represented format allows to model nested under the specified data element Readers will not produce metaevents under an unsupported type, while writers will accept but ignore metaevents under this type.
boolean	DefaultFormatInfo.isElementModeled(EventContentType contentType, boolean forReading)
boolean	JPhyloIOFormatInfo.isElementModeled(EventContentType contentType, boolean forReading) Determines whether the represented format allows to model the specified data element (content type).

Constructor parameters in info.bioinfweb.jphyloio.formatinfo with type arguments of type EventContentType

Constructor and Description
DefaultFormatInfo(SingleReaderWriterFactory factory, java.lang.String formatID, java.lang.String formatName, java.util.Set<EventContentType> supportedReaderContentTypes, java.util.Set<EventContentType> supportedWriterContentTypes, java.util.Map<EventContentType,MetadataModeling> supportedReaderMetadataModeling, java.util.Map<EventContentType,MetadataModeling> supportedWriterMetadataModeling, java.util.Set<java.lang.String> supportedReaderParameters, java.util.Set<java.lang.String> supportedWriterParameters, ReadWriteParameterMap filterParameters, java.lang.String filterDescription, java.lang.String... filterExtensions) Creates a new instance of this class.
DefaultFormatInfo(SingleReaderWriterFactory factory, java.lang.String formatID, java.lang.String formatName, java.util.Set<EventContentType> supportedReaderContentTypes, java.util.Set<EventContentType> supportedWriterContentTypes, java.util.Map<EventContentType,MetadataModeling> supportedReaderMetadataModeling, java.util.Map<EventContentType,MetadataModeling> supportedWriterMetadataModeling, java.util.Set<java.lang.String> supportedReaderParameters, java.util.Set<java.lang.String> supportedWriterParameters, ReadWriteParameterMap filterParameters, java.lang.String filterDescription, java.lang.String... filterExtensions) Creates a new instance of this class.
DefaultFormatInfo(SingleReaderWriterFactory factory, java.lang.String formatID, java.lang.String formatName, java.util.Set<EventContentType> supportedReaderContentTypes, java.util.Set<EventContentType> supportedWriterContentTypes, java.util.Map<EventContentType,MetadataModeling> supportedReaderMetadataModeling, java.util.Map<EventContentType,MetadataModeling> supportedWriterMetadataModeling, java.util.Set<java.lang.String> supportedReaderParameters, java.util.Set<java.lang.String> supportedWriterParameters, ReadWriteParameterMap filterParameters, java.lang.String filterDescription, java.lang.String... filterExtensions) Creates a new instance of this class.
DefaultFormatInfo(SingleReaderWriterFactory factory, java.lang.String formatID, java.lang.String formatName, java.util.Set<EventContentType> supportedReaderContentTypes, java.util.Set<EventContentType> supportedWriterContentTypes, java.util.Map<EventContentType,MetadataModeling> supportedReaderMetadataModeling, java.util.Map<EventContentType,MetadataModeling> supportedWriterMetadataModeling, java.util.Set<java.lang.String> supportedReaderParameters, java.util.Set<java.lang.String> supportedWriterParameters, ReadWriteParameterMap filterParameters, java.lang.String filterDescription, java.lang.String... filterExtensions) Creates a new instance of this class.

Uses of EventContentType in info.bioinfweb.jphyloio.formats.nexml

Methods in info.bioinfweb.jphyloio.formats.nexml that return types with arguments of type EventContentType

Modifier and Type	Method and Description
java.util.EnumMap<EventContentType,java.lang.String>	NeXMLReaderStreamDataProvider.getElementTypeToCurrentIDMap() Returns a map that links the currently used ID to an EventContentType.
java.util.Stack<EventContentType>	NeXMLReaderStreamDataProvider.getMetaType() Returns a stack of EventContentType that represents the currently encountered nested meta events.
java.util.Map<java.lang.String,java.util.EnumMap<EventContentType,java.util.Set<java.lang.String>>>	NeXMLWriterStreamDataProvider.getSetIDToSetElementsMap()

Uses of EventContentType in info.bioinfweb.jphyloio.formats.nexml.elementreader

Methods in info.bioinfweb.jphyloio.formats.nexml.elementreader that return EventContentType

Modifier and Type	Method and Description
protected abstract EventContentType	AbstractIDLinkSetElementReader.determineObjectType(javax.xml.namespace.QName attributeName)
EventContentType	AbstractSetElementReader.getSetType()

Constructors in info.bioinfweb.jphyloio.formats.nexml.elementreader with parameters of type EventContentType

Constructor and Description
AbstractIDLinkSetElementReader(EventContentType setType, EventContentType linkedIDType, javax.xml.namespace.QName... linkedIDsAttributes) Creates a new instance of this class.
AbstractSetElementReader(EventContentType setType, EventContentType linkedIDType, javax.xml.namespace.QName... linkedIDsAttributes)
NeXMLSetEndElementReader(EventContentType setType)

Uses of EventContentType in info.bioinfweb.jphyloio.formats.nexus

Methods in info.bioinfweb.jphyloio.formats.nexus with parameters of type EventContentType

Modifier and Type	Method and Description
java.util.List<java.lang.String>	NexusReaderStreamDataProvider.getElementList(EventContentType type, java.lang.String listID)
java.util.Map<java.lang.String,java.lang.String>	NexusReaderStreamDataProvider.getNexusNameToIDMap(EventContentType type, java.lang.String listID) Returns a map object that translates between a Nexus name and the JPhyloIO ID of the according event.
protected void	NexusEventWriter.writeLinkCommand(java.lang.String linkedID, java.lang.String linkedBlockName, EventContentType linkedContentType)
void	NexusWriterStreamDataProvider.writeLinkCommand(java.lang.String linkedID, java.lang.String linkedBlockName, EventContentType linkedContentType)

Constructors in info.bioinfweb.jphyloio.formats.nexus with parameters of type EventContentType

Constructor and Description
AbstractNexusSetWriter(NexusWriterStreamDataProvider streamDataProvider, java.lang.String commandName, EventContentType linkedContentType, java.util.Iterator<? extends ElementDataAdapter<? extends LabeledIDEvent>> dataSourceIterator, AbstractNexusEventReceiver receiver)

Uses of EventContentType in info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets

Constructors in info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets with parameters of type EventContentType

Constructor and Description
AbstractNexusSetReader(EventContentType setType, java.lang.String commandName, java.lang.String[] validBlocks, NexusReaderStreamDataProvider nexusDocument)
IDBasedSetsReader(EventContentType setType, java.lang.String commandName, java.lang.String linkedBlockTypeName, EventContentType elementType, NexusReaderStreamDataProvider streamDataProvider)

Uses of EventContentType in info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees

Methods in info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees that return EventContentType

Modifier and Type	Method and Description
protected EventContentType	ENewickNetworkReader.getElementContentType()
protected EventContentType	TreeReader.getElementContentType()

Uses of EventContentType in info.bioinfweb.jphyloio.formats.nexus.receivers

Constructor parameters in info.bioinfweb.jphyloio.formats.nexus.receivers with type arguments of type EventContentType

Constructor and Description
ReferenceOnlySetReceiver(NexusWriterStreamDataProvider streamDataProvider, java.util.Set<EventContentType> allowedTypes)
ReferenceOnlySetReceiver(NexusWriterStreamDataProvider streamDataProvider, java.util.Set<EventContentType> allowedTypes, java.util.Set<EventContentType> ignoredTypes)
ReferenceOnlySetReceiver(NexusWriterStreamDataProvider streamDataProvider, java.util.Set<EventContentType> allowedTypes, java.util.Set<EventContentType> ignoredTypes)

Uses of EventContentType in info.bioinfweb.jphyloio.push

Methods in info.bioinfweb.jphyloio.push with parameters of type EventContentType

Modifier and Type	Method and Description
void	EventForwarder.readUntil(JPhyloIOEventReader reader, EventContentType type) Consumes all available events from the specified listener and forwards them to the registered listeners until an event of the specified type is reached.

Method parameters in info.bioinfweb.jphyloio.push with type arguments of type EventContentType

Modifier and Type	Method and Description
void	EventForwarder.readUntil(JPhyloIOEventReader reader, java.util.Set<EventContentType> types) Consumes all available events from the specified listener and forwards them to the registered listeners until any event of one of the specified types is reached.

Uses of EventContentType in info.bioinfweb.jphyloio.utils

Methods in info.bioinfweb.jphyloio.utils with parameters of type EventContentType

Modifier and Type	Method and Description
void	LabelEditingReporter.addEdit(EventContentType contentType, java.lang.String id, java.lang.String label, boolean edited) Adds a new mapping from an element ID to the label used for it in the target document to this instance.
boolean	LabelEditingReporter.anyLabelEdited(EventContentType contentType) Determines whether any label of data elements of the specified content type was edited.
java.lang.String	LabelEditingReporter.getEditedLabel(EventContentType contentType, java.lang.String id) Returns the (edited) label associated with the specified data element.
LabelEditingReporter.LabelStatus	LabelEditingReporter.getLabelStatus(EventContentType contentType, java.lang.String id) Returns the status of the specified data element and its label.
boolean	LabelEditingReporter.isLabelUsed(EventContentType contentType, java.lang.String label) Checks whether the specified label was already used for the specified content type.