| Package | Description |
|---|---|
| info.bioinfweb.jphyloio.factory |
Contains interfaces and general implementations for creating JPhyloIO readers and writers related to
JPhyloIOReaderWriterFactory. |
| info.bioinfweb.jphyloio.formatinfo |
Contains
JPhyloIOFormatInfo and related classes that describe a format supported by JPhyloIO. |
| info.bioinfweb.jphyloio.formats.fasta |
Contains classes for reading from and writing to streams/files in FASTA format.
|
| info.bioinfweb.jphyloio.formats.mega |
Contains classes for reading from and writing to streams/files in MEGA format.
|
| info.bioinfweb.jphyloio.formats.newick |
Contains classes for reading from and writing to streams/files in Newick tree format.
|
| info.bioinfweb.jphyloio.formats.nexml |
Contains classes for reading from and writing to streams/files in NeXML format.
|
| info.bioinfweb.jphyloio.formats.nexus |
Contains classes for reading from and writing to streams/files in Nexus format.
|
| info.bioinfweb.jphyloio.formats.pde |
Contains classes for reading from streams/files in PDE format.
|
| info.bioinfweb.jphyloio.formats.phylip |
Contains classes for reading from and writing to streams/files in Phylip format.
|
| info.bioinfweb.jphyloio.formats.phyloxml |
Contains classes for reading from and writing to streams/files in PhyloXML format.
|
| info.bioinfweb.jphyloio.formats.xtg |
Contains classes for reading from and writing to streams/files in XTG format.
|
| Class and Description |
|---|
| JPhyloIOFormatInfo
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatInfo
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
|
| MetadataModeling
Instances of this class describe which metadata can be nested under a certain content type in a certain format and are returned by
JPhyloIOFormatInfo.getMetadataModeling(info.bioinfweb.jphyloio.events.type.EventContentType, boolean). |
| MetadataTopologyType
Enumerates possible combinations of meta events to be nested between start and end events of other content types.
|
| Class and Description |
|---|
| JPhyloIOFormatInfo
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatInfo
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatInfo
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatInfo
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatInfo
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatInfo
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatInfo
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatInfo
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatInfo
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
|