info.bioinfweb.jphyloio.formats.newick

Interface NewickConstants

All Known Implementing Classes:

HotCommentDataReader, ListTranslator, NewickEventReader, NewickEventWriter, NewickFactory, NewickNodeEdgeEventReceiver, NewickScanner, NewickStringReader, NewickStringWriter, NewickUtils, NHXUtils

public interface NewickConstants

Field Summary

Fields

Modifier and Type	Field and Description
static char	ALLOCATION_SEPARATOR_SYMBOL
static char	ALLOCATION_SYMBOL
static char	ALTERNATIVE_NAME_DELIMITER
static char	COMMENT_END
static char	COMMENT_START
static javax.xml.namespace.QName	DATA_TYPE_NEWICK_ARRAY
static java.lang.String	E_NEWICK_EDGE_TYPE_HYBRIDIZATION
static java.lang.String	E_NEWICK_EDGE_TYPE_LATERAL_GENE_TRANSFER
static java.lang.String	E_NEWICK_EDGE_TYPE_RECOMBINATION
static java.lang.String	E_NEWICK_NAMESPACE_PREFIX
static java.lang.String	E_NEWICK_NETWORK_DATA_SEPARATOR
static char	ELEMENT_SEPERATOR
static char	FIELD_END_SYMBOL
static char	FIELD_START_SYMBOL
static char	FIELD_VALUE_SEPARATOR_SYMBOL
static char	FREE_NAME_BLANK
static char	HOT_COMMENT_START_SYMBOL
static char	INDEX_END_SYMBOL
static char	INDEX_START_SYMBOL
static char	LENGTH_SEPERATOR
static char	NAME_DELIMITER
static java.lang.String	NEWICK_DATA_TYPE_NAMESPACE
static java.lang.String	NEWICK_FORMAT_NAME
static java.lang.String	NEWICK_NAMESPACE_PREFIX
static java.lang.String	NHX_KEY_CONFIDENCE
static java.lang.String	NHX_KEY_EVENT
static java.lang.String	NHX_KEY_GENE_NAME
static java.lang.String	NHX_KEY_PREFIX
static java.lang.String	NHX_KEY_SCIENTIFIC_NAME
static java.lang.String	NHX_KEY_SEQUENCE_ACCESSION
static java.lang.String	NHX_KEY_TAXONOMY_ID
static java.lang.String	NHX_START
static char	NHX_VALUE_SEPARATOR_SYMBOL
static javax.xml.namespace.QName	PREDICATE_E_NEWICK_EDGE_TYPE
static java.lang.String	ROOTED_HOT_COMMENT
static char	SUBTREE_END
static char	SUBTREE_START
static char	TERMINAL_SYMBOL
static java.lang.String	UNROOTED_HOT_COMMENT

Field Detail

NEWICK_FORMAT_NAME

static final java.lang.String NEWICK_FORMAT_NAME

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Constant Field Values

SUBTREE_START

static final char SUBTREE_START

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Constant Field Values

SUBTREE_END

static final char SUBTREE_END

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Constant Field Values

NAME_DELIMITER

static final char NAME_DELIMITER

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Constant Field Values

ALTERNATIVE_NAME_DELIMITER

static final char ALTERNATIVE_NAME_DELIMITER

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Constant Field Values

LENGTH_SEPERATOR

static final char LENGTH_SEPERATOR

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Constant Field Values

ELEMENT_SEPERATOR

static final char ELEMENT_SEPERATOR

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Constant Field Values

TERMINAL_SYMBOL

static final char TERMINAL_SYMBOL

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Constant Field Values

COMMENT_START

static final char COMMENT_START

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Constant Field Values

COMMENT_END

static final char COMMENT_END

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Constant Field Values

FREE_NAME_BLANK

static final char FREE_NAME_BLANK

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Constant Field Values

ROOTED_HOT_COMMENT

static final java.lang.String ROOTED_HOT_COMMENT

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Constant Field Values

UNROOTED_HOT_COMMENT

static final java.lang.String UNROOTED_HOT_COMMENT

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Constant Field Values

HOT_COMMENT_START_SYMBOL

static final char HOT_COMMENT_START_SYMBOL

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Constant Field Values

ALLOCATION_SEPARATOR_SYMBOL

static final char ALLOCATION_SEPARATOR_SYMBOL

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Constant Field Values

ALLOCATION_SYMBOL

static final char ALLOCATION_SYMBOL

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Constant Field Values

FIELD_START_SYMBOL

static final char FIELD_START_SYMBOL

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Constant Field Values

FIELD_END_SYMBOL

static final char FIELD_END_SYMBOL

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Constant Field Values

FIELD_VALUE_SEPARATOR_SYMBOL

static final char FIELD_VALUE_SEPARATOR_SYMBOL

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Constant Field Values

INDEX_START_SYMBOL

static final char INDEX_START_SYMBOL

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Constant Field Values

INDEX_END_SYMBOL

static final char INDEX_END_SYMBOL

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Constant Field Values

NHX_VALUE_SEPARATOR_SYMBOL

static final char NHX_VALUE_SEPARATOR_SYMBOL

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Constant Field Values

NHX_START

static final java.lang.String NHX_START

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Constant Field Values

NHX_KEY_PREFIX

static final java.lang.String NHX_KEY_PREFIX

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Constant Field Values

NHX_KEY_GENE_NAME

static final java.lang.String NHX_KEY_GENE_NAME

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Constant Field Values

NHX_KEY_SEQUENCE_ACCESSION

static final java.lang.String NHX_KEY_SEQUENCE_ACCESSION

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Constant Field Values

NHX_KEY_CONFIDENCE

static final java.lang.String NHX_KEY_CONFIDENCE

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Constant Field Values

NHX_KEY_EVENT

static final java.lang.String NHX_KEY_EVENT

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Constant Field Values

NHX_KEY_SCIENTIFIC_NAME

static final java.lang.String NHX_KEY_SCIENTIFIC_NAME

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Constant Field Values

NHX_KEY_TAXONOMY_ID

static final java.lang.String NHX_KEY_TAXONOMY_ID

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Constant Field Values

E_NEWICK_NETWORK_DATA_SEPARATOR

static final java.lang.String E_NEWICK_NETWORK_DATA_SEPARATOR

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Constant Field Values

E_NEWICK_EDGE_TYPE_RECOMBINATION

static final java.lang.String E_NEWICK_EDGE_TYPE_RECOMBINATION

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Constant Field Values

E_NEWICK_EDGE_TYPE_HYBRIDIZATION

static final java.lang.String E_NEWICK_EDGE_TYPE_HYBRIDIZATION

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Constant Field Values

E_NEWICK_EDGE_TYPE_LATERAL_GENE_TRANSFER

static final java.lang.String E_NEWICK_EDGE_TYPE_LATERAL_GENE_TRANSFER

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Constant Field Values

E_NEWICK_NAMESPACE_PREFIX

static final java.lang.String E_NEWICK_NAMESPACE_PREFIX

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Constant Field Values

PREDICATE_E_NEWICK_EDGE_TYPE

static final javax.xml.namespace.QName PREDICATE_E_NEWICK_EDGE_TYPE

NEWICK_NAMESPACE_PREFIX

static final java.lang.String NEWICK_NAMESPACE_PREFIX

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Constant Field Values

NEWICK_DATA_TYPE_NAMESPACE

static final java.lang.String NEWICK_DATA_TYPE_NAMESPACE

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Constant Field Values

DATA_TYPE_NEWICK_ARRAY

static final javax.xml.namespace.QName DATA_TYPE_NEWICK_ARRAY