Package | Description |
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info.bioinfweb.jphyloio.formats.newick |
Contains classes for reading from and writing to streams/files in Newick tree format.
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info.bioinfweb.jphyloio.objecttranslation.implementations |
Contains implementations of
ObjectTranslator . |
Modifier and Type | Class and Description |
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class |
HotCommentDataReader
Reads meta information from a hot comment in a Newick string like it is generated by MrBayes or BEAST.
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class |
NewickEventReader
Reads tree files in Newick format.
|
class |
NewickEventWriter
Event writer for the Newick format.
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class |
NewickFactory
Reader and writer factory for the Newick format.
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class |
NewickNodeEdgeEventReceiver<E extends JPhyloIOEvent> |
class |
NewickScanner
Reads Newick tokens from a stream.
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class |
NewickStringReader
Implementation to read Newick tree definitions to be used by
NewickEventReader and TreeReader . |
class |
NewickStringWriter
Implementation to write Newick tree definitions to be used by
NewickEventWriter and NexusEventWriter . |
class |
NewickUtils |
class |
NHXUtils
Tool method for working with NHX annotation on Newick strings.
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Modifier and Type | Class and Description |
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class |
ListTranslator
Reads and writes string representations of simple values as used in Newick or Nexus.
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