| Package | Description |
|---|---|
| info.bioinfweb.jphyloio.formats.newick |
Contains classes for reading from and writing to streams/files in Newick tree format.
|
| info.bioinfweb.jphyloio.formats.nexus |
Contains classes for reading from and writing to streams/files in Nexus format.
|
| info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees |
Contains classes for reading Nexus commands in a
TREES block. |
| info.bioinfweb.jphyloio.objecttranslation.implementations |
Contains implementations of
ObjectTranslator. |
| Class and Description |
|---|
| NewickConstants |
| NewickEventWriter
Event writer for the Newick format.
|
| NewickReaderNodeLabelProcessor
Classes implementing this interface are used to modify a node label read from a Newick string
(e.g., by using information from a taxon list or translation table.)
|
| NewickToken |
| NewickTokenType |
| NewickUtils.ReadElement |
| NewickWriterNodeLabelProcessor
Classes implementing this interface are used to create a node label to be written to a Newick string
from its event.
|
| NHXUtils
Tool method for working with NHX annotation on Newick strings.
|
| Class and Description |
|---|
| DefaultNewickWriterNodeLabelProcessor
The node label processor used by
NewickEventWriter. |
| NewickWriterNodeLabelProcessor
Classes implementing this interface are used to create a node label to be written to a Newick string
from its event.
|
| Class and Description |
|---|
| NewickReaderNodeLabelProcessor
Classes implementing this interface are used to modify a node label read from a Newick string
(e.g., by using information from a taxon list or translation table.)
|
| Class and Description |
|---|
| NewickConstants |