| Package | Description |
|---|---|
| info.bioinfweb.jphyloio.formats.nexus |
Contains classes for reading from and writing to streams/files in Nexus format.
|
| info.bioinfweb.jphyloio.formats.nexus.blockhandlers |
Contains implementations of
NexusCommandEventReader
for commands that are valid in all Nexus blocks. |
| info.bioinfweb.jphyloio.formats.nexus.commandreaders |
Contains general classes for reading Nexus commands.
|
| info.bioinfweb.jphyloio.formats.nexus.commandreaders.all |
Contains implementations of
NexusCommandEventReader
for commands that are valid in all Nexus blocks. |
| info.bioinfweb.jphyloio.formats.nexus.commandreaders.characters |
Contains classes for reading Nexus commands in a
CHARACTERS, UNALIGNED or DATA
block. |
| info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets |
Contains classes for reading Nexus commands in a
SETS block. |
| info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa |
Contains classes for reading Nexus commands in a
TAXA block. |
| info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees |
Contains classes for reading Nexus commands in a
TREES block. |
| info.bioinfweb.jphyloio.formats.nexus.receivers |
Contains implementations of
JPhyloIOEventReceiver used internally by
NexusEventReader. |
| Class and Description |
|---|
| NexusConstants
Defines constants necessary to read and write Nexus files.
|
| NexusEventReader
Event based reader for Nexus files.
|
| NexusEventWriter
Event based writer for the Nexus format.
|
| NexusMatrixWriteResult |
| NexusReaderStreamDataProvider
Stores data that shall be shared among different implementations of
NexusCommandEventReader
reading from the same document. |
| NexusWriterStreamDataProvider |
| Class and Description |
|---|
| NexusConstants
Defines constants necessary to read and write Nexus files.
|
| NexusReaderStreamDataProvider
Stores data that shall be shared among different implementations of
NexusCommandEventReader
reading from the same document. |
| Class and Description |
|---|
| NexusConstants
Defines constants necessary to read and write Nexus files.
|
| NexusReaderStreamDataProvider
Stores data that shall be shared among different implementations of
NexusCommandEventReader
reading from the same document. |
| Class and Description |
|---|
| NexusConstants
Defines constants necessary to read and write Nexus files.
|
| NexusReaderStreamDataProvider
Stores data that shall be shared among different implementations of
NexusCommandEventReader
reading from the same document. |
| Class and Description |
|---|
| NexusConstants
Defines constants necessary to read and write Nexus files.
|
| NexusReaderStreamDataProvider
Stores data that shall be shared among different implementations of
NexusCommandEventReader
reading from the same document. |
| Class and Description |
|---|
| NexusConstants
Defines constants necessary to read and write Nexus files.
|
| NexusReaderStreamDataProvider
Stores data that shall be shared among different implementations of
NexusCommandEventReader
reading from the same document. |
| Class and Description |
|---|
| NexusConstants
Defines constants necessary to read and write Nexus files.
|
| NexusReaderStreamDataProvider
Stores data that shall be shared among different implementations of
NexusCommandEventReader
reading from the same document. |
| Class and Description |
|---|
| NexusConstants
Defines constants necessary to read and write Nexus files.
|
| NexusReaderStreamDataProvider
Stores data that shall be shared among different implementations of
NexusCommandEventReader
reading from the same document. |
| Class and Description |
|---|
| NexusConstants
Defines constants necessary to read and write Nexus files.
|
| NexusWriterStreamDataProvider |