| Package | Description |
|---|---|
| info.bioinfweb.jphyloio.factory |
Contains interfaces and general implementations for creating JPhyloIO readers and writers related to
JPhyloIOReaderWriterFactory. |
| info.bioinfweb.jphyloio.formats.fasta |
Contains classes for reading from and writing to streams/files in FASTA format.
|
| info.bioinfweb.jphyloio.formats.mega |
Contains classes for reading from and writing to streams/files in MEGA format.
|
| info.bioinfweb.jphyloio.formats.newick |
Contains classes for reading from and writing to streams/files in Newick tree format.
|
| info.bioinfweb.jphyloio.formats.nexml |
Contains classes for reading from and writing to streams/files in NeXML format.
|
| info.bioinfweb.jphyloio.formats.nexus |
Contains classes for reading from and writing to streams/files in Nexus format.
|
| info.bioinfweb.jphyloio.formats.pde |
Contains classes for reading from streams/files in PDE format.
|
| info.bioinfweb.jphyloio.formats.phylip |
Contains classes for reading from and writing to streams/files in Phylip format.
|
| info.bioinfweb.jphyloio.formats.phyloxml |
Contains classes for reading from and writing to streams/files in PhyloXML format.
|
| info.bioinfweb.jphyloio.formats.xml |
Contains classes implementing shared functionality for reading from and writing to streams/files in XML formats.
|
| info.bioinfweb.jphyloio.formats.xtg |
Contains classes for reading from and writing to streams/files in XTG format.
|
| Class and Description |
|---|
| JPhyloIOFormatIDs
Provides unique IDs for all formats that are supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatIDs
Provides unique IDs for all formats that are supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatIDs
Provides unique IDs for all formats that are supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatIDs
Provides unique IDs for all formats that are supported by JPhyloIO.
|
| Class and Description |
|---|
| BufferedEventInfo
Used to buffer information on an event and its nested events.
|
| JPhyloIOFormatIDs
Provides unique IDs for all formats that are supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatIDs
Provides unique IDs for all formats that are supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatIDs
Provides unique IDs for all formats that are supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatIDs
Provides unique IDs for all formats that are supported by JPhyloIO.
|
| Class and Description |
|---|
| JPhyloIOFormatIDs
Provides unique IDs for all formats that are supported by JPhyloIO.
|
| Class and Description |
|---|
| NodeEdgeInfo
This class is used by
JPhyloIOEventReaders processing phylogenetic trees or networks to model nodes and edges. |
| Class and Description |
|---|
| JPhyloIOFormatIDs
Provides unique IDs for all formats that are supported by JPhyloIO.
|