| Package | Description |
|---|---|
| info.bioinfweb.libralign.model.adapters |
Contains adapter classes that allow to access the data provided by
BasicAlignmentModelView in other ways
(e.g. |
| info.bioinfweb.libralign.model.implementations.decorate |
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractSingleSequenceDataAdapter<T>
Implements basic functionality of
SingleSequenceDataAdapter. |
class |
BioJava3SequenceAdapter<T,C extends org.biojava3.core.sequence.template.Compound>
Adapter class that allows to access the contents of an implementation of
AlignmentModel
as a set of BioJava Sequence objects. |
class |
CharSequenceAdapter<T>
Adapter class that allows to access the contents of an implementation of
AlignmentModel
as a set of CharSequences or Strings. |
class |
SingleBioJava3SequenceAdapter<T,C extends org.biojava3.core.sequence.template.Compound>
Abstract base class for all implementations of
SingleSequenceDataAdapter that allow
to view one sequence of a AlignmentModel as a BioJava Sequence object. |
class |
SingleCharSequenceAdapter<T>
An adapter class allowing to view a single sequence provided by an implementation of
AlignmentModel as a CharSequence. |
class |
StringAdapter<T>
Returns the sequences contained in the underlying data source as strings.
|
| Modifier and Type | Class and Description |
|---|---|
class |
DelegatedAlignmentModelView<T>
Implementation of
AlignmentModelView that delegates all methods to the underlying model
and uses the same token type as the underlying model. |