| Package | Description |
|---|---|
| info.bioinfweb.libralign.pherogram |
Contains classes related to storing and displaying a trace file from Sanger sequencing.
|
| info.bioinfweb.libralign.pherogram.model |
Contains
PherogramProvider and its implementations. |
| info.bioinfweb.libralign.pherogram.view |
Contains classes to display an undistorted pherogram.
|
| Modifier and Type | Method and Description |
|---|---|
PherogramComponentModel |
PherogramComponent.getModel()
Returns the model providing the base call sequence, the trace curves and the cut positions.
|
| Modifier and Type | Class and Description |
|---|---|
class |
PherogramAreaModel
The data area model of a
PherogramArea containing the pherogram source, as well as cut positions,
the column where the pherogram is attached to the editable sequence and pherogram distortion information. |
| Modifier and Type | Method and Description |
|---|---|
PherogramComponentModel |
PherogramModelChangeEvent.getSource() |
| Constructor and Description |
|---|
PherogramAreaModel(PherogramComponentModel model)
Creates a new instance based on the specified pherogram component model instance.
|
PherogramComponentModel(PherogramComponentModel model)
Creates a copy from the specified instance.
|
PherogramCutPositionChangeEvent(PherogramComponentModel source,
boolean moreEventsUpcoming,
int oldBaseCallIndex,
int newBaseCallIndex,
PherogramAlignmentRelation oldEditableIndex,
PherogramAlignmentRelation newEditableIndex)
Creates a new instance of this class.
|
PherogramFirstSeqPosChangeEvent(PherogramComponentModel source,
boolean moreEventsUpcoming,
int oldPosition,
int newPosition)
Creates a new instance of this class.
|
PherogramModelChangeEvent(PherogramComponentModel source,
boolean moreEventsUpcoming)
Creates a new instance of this class.
|
PherogramProviderChangeEvent(PherogramComponentModel source,
boolean moreEventsUpcoming,
PherogramProvider oldProvider,
PherogramProvider newProvider,
boolean reverseComplemented)
Creates a new instance of this class.
|
| Modifier and Type | Method and Description |
|---|---|
PherogramComponentModel |
PherogramTraceCurveView.getModel() |
| Modifier and Type | Method and Description |
|---|---|
void |
PherogramTraceCurveView.setModel(PherogramComponentModel model) |