Uses of Package
info.bioinfweb.libralign.pherogram.model

Packages that use info.bioinfweb.libralign.pherogram.model

Package	Description
info.bioinfweb.libralign.dataarea.implementations.pherogram	Contains PherogramArea and other classes used in its implementation.
info.bioinfweb.libralign.pherogram	Contains classes related to storing and displaying a trace file from Sanger sequencing.
info.bioinfweb.libralign.pherogram.model	Contains PherogramProvider and its implementations.
info.bioinfweb.libralign.pherogram.view	Contains classes to display an undistorted pherogram.

Classes in info.bioinfweb.libralign.pherogram.model used by info.bioinfweb.libralign.dataarea.implementations.pherogram

Class and Description
PherogramAreaModel The data area model of a PherogramArea containing the pherogram source, as well as cut positions, the column where the pherogram is attached to the editable sequence and pherogram distortion information.

Classes in info.bioinfweb.libralign.pherogram.model used by info.bioinfweb.libralign.pherogram

Class and Description
PherogramComponentModel The model used by all views displaying pherograms.

Classes in info.bioinfweb.libralign.pherogram.model used by info.bioinfweb.libralign.pherogram.model

Class and Description
PherogramAlignmentRelation A bean class storing the base call sequence position corresponding to editable sequence position or the other way around in an alignment between the base call sequence from Sanger sequencing and the corresponding editable sequence in an AlignmentArea.
PherogramComponentModel The model used by all views displaying pherograms.
PherogramComponentModelListener Interface to be implemented by all classes that need to be informed on changes in instances of PherogramComponentModel.
PherogramCutPositionChangeEvent Event indicating that a cut position of an instance of PherogramComponentModel was changed.
PherogramFirstSeqPosChangeEvent Event that indicates that PherogramAreaModel.getFirstSeqPos() was changed.
PherogramModelChangeEvent All events indicating changes in an instance of PherogramComponentModel should be inherited from this class.
PherogramProviderChangeEvent Change event that indicates the the pherogram provider of an instance of PherogramComponentModel was replaced or its contents changed.
ShiftChange Used by PherogramAlignmentModel to model which position in the base call sequence corresponds to which position in the editable alignment sequence.

Classes in info.bioinfweb.libralign.pherogram.model used by info.bioinfweb.libralign.pherogram.view

Class and Description
PherogramComponentModel The model used by all views displaying pherograms.