Uses of Package
info.bioinfweb.jphyloio.formats.nexml

Packages that use info.bioinfweb.jphyloio.formats.nexml

Package	Description
info.bioinfweb.jphyloio	The main package of JPhyloIO.
info.bioinfweb.jphyloio.dataadapters.implementations	Contains some basic (abstract) implementations of JPhyloIOEventWriter.
info.bioinfweb.jphyloio.formats.nexml	Contains classes for reading from and writing to streams/files in NeXML format.
info.bioinfweb.jphyloio.formats.nexml.elementreader	Contains implementations of XMLElementReader used by NeXMLEventReader.
info.bioinfweb.jphyloio.formats.nexml.receivers	Contains implementations for JPhyloIOEventReceiver necessary for writing NeXML.

Classes in info.bioinfweb.jphyloio.formats.nexml used by info.bioinfweb.jphyloio

Class and Description
TokenDefinitionLabelHandling Instances of this enum can be used as parameter values for ReadWriteParameterNames.KEY_NEXML_TOKEN_DEFINITION_LABEL_METADATA.
TokenTranslationStrategy Instances of this enum can be used as parameter values for ReadWriteParameterNames#KEY_NEXML_TOKEN_TRANSLATION_STRATEGY.

Classes in info.bioinfweb.jphyloio.formats.nexml used by info.bioinfweb.jphyloio.dataadapters.implementations

Class and Description
NeXMLConstants Defines constants necessary to read and write NeXML files.

Classes in info.bioinfweb.jphyloio.formats.nexml used by info.bioinfweb.jphyloio.formats.nexml

Class and Description
NeXMLConstants Defines constants necessary to read and write NeXML files.
NeXMLEventReader An event reader for the NeXML format.
NeXMLEventWriter Event based writer for the NeXML format.
NeXMLReaderStreamDataProvider Stores data that shall be shared among different implementations of AbstractNeXMLElementReader reading from the same document.
NeXMLReaderTokenSetInformation Class that is used by NeXMLEventReader to store information about a token set.
NeXMLSingleTokenDefinitionInformation Class that is used by NeXMLEventReader to store information about a single token definition.
NeXMLWriterAlignmentInformation Class that is used by NeXMLEventWriter to store information about an alignment.
NeXMLWriterStreamDataProvider Stores data that shall be shared among different implementations of AbstractNeXMLDataReceiver and the writer instance that uses them.
NeXMLWriterTokenSetInformation Class that is used by NeXMLEventWriter to store information about a token set.
TokenDefinitionLabelHandling Instances of this enum can be used as parameter values for ReadWriteParameterNames.KEY_NEXML_TOKEN_DEFINITION_LABEL_METADATA.
TokenTranslationStrategy Instances of this enum can be used as parameter values for ReadWriteParameterNames#KEY_NEXML_TOKEN_TRANSLATION_STRATEGY.

Classes in info.bioinfweb.jphyloio.formats.nexml used by info.bioinfweb.jphyloio.formats.nexml.elementreader

Class and Description
NeXMLConstants Defines constants necessary to read and write NeXML files.
NeXMLReaderStreamDataProvider Stores data that shall be shared among different implementations of AbstractNeXMLElementReader reading from the same document.
TokenTranslationStrategy Instances of this enum can be used as parameter values for ReadWriteParameterNames#KEY_NEXML_TOKEN_TRANSLATION_STRATEGY.

Classes in info.bioinfweb.jphyloio.formats.nexml used by info.bioinfweb.jphyloio.formats.nexml.receivers

Class and Description
NeXMLConstants Defines constants necessary to read and write NeXML files.
NeXMLWriterStreamDataProvider Stores data that shall be shared among different implementations of AbstractNeXMLDataReceiver and the writer instance that uses them.