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F

finalize() - Method in class info.bioinfweb.libralign.model.utils.indextranslation.AbstractIndexTranslator

finishVisibilityUpdate(boolean, Collection<? extends DataArea>) - Method in class info.bioinfweb.libralign.dataarea.DataAreasModel

Enables #fireVisibilityChanged(DataAreaList, Collection) again and makes a call of this method to inform the listeners about previous changes.

fireAfterCharSetChange(CharSetChangeEvent) - Method in class info.bioinfweb.libralign.dataarea.implementations.charset.CharSetDataModel

Informs all listeners that a character set has been inserted, removed or replaced.

fireAfterCharSetColorChanged(CharSetColorChangeEvent) - Method in class info.bioinfweb.libralign.dataarea.implementations.charset.CharSetDataModel

Informs all listeners that the color of a character set has been changed.

fireAfterCharSetColumnChange(CharSetColumnChangeEvent) - Method in class info.bioinfweb.libralign.dataarea.implementations.charset.CharSetDataModel

Informs all listeners that one or more neighboring columns have been added to or removed from a character set.

fireAfterCharSetRenamed(CharSetRenamedEvent) - Method in class info.bioinfweb.libralign.dataarea.implementations.charset.CharSetDataModel

Informs all listeners that a character set has been renamed.

fireAfterSequenceChange(SequenceChangeEvent<T>) - Method in class info.bioinfweb.libralign.model.implementations.AbstractAlignmentModel

Informs all listeners that a sequence has been inserted, removed or replaced.

fireAfterSequenceChange(SequenceChangeEvent<T>) - Method in class info.bioinfweb.libralign.model.implementations.AbstractUndecoratedAlignmentModel

fireAfterSequenceRenamed(SequenceRenamedEvent<T>) - Method in class info.bioinfweb.libralign.model.implementations.AbstractAlignmentModel

Informs all listeners that a sequence has been renamed.

fireAfterTokenChange(TokenChangeEvent<T>) - Method in class info.bioinfweb.libralign.model.implementations.AbstractAlignmentModel

Informs all listeners that a sequence has been inserted, removed or replaced.

fireAfterTokenChange(TokenChangeEvent<T>) - Method in class info.bioinfweb.libralign.model.implementations.AbstractUndecoratedAlignmentModel

fireInsertChanged() - Method in class info.bioinfweb.libralign.editsettings.EditSettings

fireInsertedRemoved(ListChangeType, Collection<? extends DataArea>) - Method in class info.bioinfweb.libralign.dataarea.DataAreasModel

Informs all listeners that a data area has been added or removed.

fireInsertedRemoved(ListChangeType, DataArea) - Method in class info.bioinfweb.libralign.dataarea.DataAreasModel

Informs all listeners that a data area has been added or removed.

fireInsertLeftInDataAreaChanged() - Method in class info.bioinfweb.libralign.editsettings.EditSettings

fireLeftCutPositionChanged(int, PherogramAlignmentRelation, boolean) - Method in class info.bioinfweb.libralign.pherogram.model.PherogramComponentModel

firePherogramProviderChanged(PherogramProvider, boolean, boolean) - Method in class info.bioinfweb.libralign.pherogram.model.PherogramComponentModel

firePropertyChanged(String, Object, Object) - Method in class info.bioinfweb.libralign.alignmentarea.paintsettings.PaintSettings

fireRightCutPositionChanged(int, PherogramAlignmentRelation, boolean) - Method in class info.bioinfweb.libralign.pherogram.model.PherogramComponentModel

fireSelectionChanged() - Method in class info.bioinfweb.libralign.alignmentarea.selection.SelectionModel

Informs all listeners that the selection changed.

fireSelectionChanged() - Method in class info.bioinfweb.libralign.dataarea.implementations.charset.CharSetArea

fireTokenPainterListChange() - Method in class info.bioinfweb.libralign.alignmentarea.paintsettings.PaintSettings

fireTokenPainterReplaced(TokenPainter, TokenPainter, int) - Method in class info.bioinfweb.libralign.alignmentarea.paintsettings.PaintSettings

fireVisibilityChanged(boolean, Collection<? extends DataArea>) - Method in class info.bioinfweb.libralign.dataarea.DataAreasModel

Informs all listeners that the visibility of a set of data areas has changed.

fireVisibilityChanged(boolean, DataArea) - Method in class info.bioinfweb.libralign.dataarea.DataAreasModel

Informs all listeners that the visibility of a data area has changed.

fireWorkingModeChanged(WorkingMode) - Method in class info.bioinfweb.libralign.editsettings.EditSettings

fireZoomChange(double, double) - Method in class info.bioinfweb.libralign.alignmentarea.paintsettings.PaintSettings

firstSequencePositionChange(PherogramFirstSeqPosChangeEvent) - Method in interface info.bioinfweb.libralign.pherogram.model.PherogramComponentModelListener

This method is called, if the PherogramAreaModel.getFirstSeqPos() was changed.

FLOAT_MAX_REPRESENTATION_LENGTH - Static variable in class info.bioinfweb.libralign.model.tokenset.continuous.FloatTokenSet

FloatAlignmentModelFactory - Class in info.bioinfweb.libralign.model.factory.continuous

Factory that creates ArrayListAlignmentModels with Float values as tokens.

FloatAlignmentModelFactory() - Constructor for class info.bioinfweb.libralign.model.factory.continuous.FloatAlignmentModelFactory

FloatTokenSet - Class in info.bioinfweb.libralign.model.tokenset.continuous

Implementation of a token set containing all possible float values.

FloatTokenSet() - Constructor for class info.bioinfweb.libralign.model.tokenset.continuous.FloatTokenSet

FONT_HEIGHT_FACTOR - Static variable in class info.bioinfweb.libralign.pherogram.PherogramFormats

Used to determine the line spacing around base calls, indices or probabilities.

FONT_SIZE_FACTOR - Static variable in class info.bioinfweb.libralign.alignmentarea.tokenpainter.SingleColorTokenPainter

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