I-Index

A B C D E F G H I J K L M N O P Q R S T U V W Z

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idByIndex(int) - Method in class info.bioinfweb.libralign.alignmentarea.order.SequenceOrder: Returns the unique identifier of the sequence displayed at the specified index
idIterator() - Method in class info.bioinfweb.libralign.alignmentarea.order.SequenceOrder: Returns an iterator over all IDs contained in this order.
INDEX_LABEL_INTERVAL - Static variable in class info.bioinfweb.libralign.pherogram.PherogramPainter
indexByID(String) - Method in class info.bioinfweb.libralign.alignmentarea.order.SequenceOrder: Returns the display index of the sequence with the specified ID.
indexOf(TokenPainter) - Method in class info.bioinfweb.libralign.alignmentarea.paintsettings.TokenPainterList: Returns the first index of the specified token painter in this list.
indexOf(Object) - Method in class info.bioinfweb.libralign.dataarea.DataAreaChangeEventList
IndexRelation - Class in info.bioinfweb.libralign.model.utils.indextranslation: Bean class that models the result of an index translation between an aligned and an unaligned sequence.
IndexRelation(int, int, int) - Constructor for class info.bioinfweb.libralign.model.utils.indextranslation.IndexRelation
indexToString(int) - Method in class info.bioinfweb.libralign.model.utils.indextranslation.IndexRelation
IndexTranslations() - Constructor for class info.bioinfweb.libralign.model.utils.indextranslation.RandomAccessIndexTranslator.IndexTranslations
IndexTranslator<T> - Interface in info.bioinfweb.libralign.model.utils.indextranslation: Interface to be implemented by classes that can translate between alignment column indices and unalinged indices if the single sequences within an alignment.
info.bioinfweb.libralign.actions - package info.bioinfweb.libralign.actions
info.bioinfweb.libralign.alignmentarea - package info.bioinfweb.libralign.alignmentarea: Contains basic implementations for displaying an alignment area.
info.bioinfweb.libralign.alignmentarea.content - package info.bioinfweb.libralign.alignmentarea.content: Contains classes related to AlignmentContentArea which display the contents of an alignment.
info.bioinfweb.libralign.alignmentarea.label - package info.bioinfweb.libralign.alignmentarea.label: Contains general classes implementing the labeling of sequences and data areas.
info.bioinfweb.libralign.alignmentarea.order - package info.bioinfweb.libralign.alignmentarea.order
info.bioinfweb.libralign.alignmentarea.paintsettings - package info.bioinfweb.libralign.alignmentarea.paintsettings: Contains classes managing the painting of the contents of AlignmentAreas.
info.bioinfweb.libralign.alignmentarea.rowsarea - package info.bioinfweb.libralign.alignmentarea.rowsarea
info.bioinfweb.libralign.alignmentarea.selection - package info.bioinfweb.libralign.alignmentarea.selection: Contains classes necessary to perform the selection of rows and/or columns in an AlignmentArea.
info.bioinfweb.libralign.alignmentarea.tokenpainter - package info.bioinfweb.libralign.alignmentarea.tokenpainter: Contains implementations of TokenPainter
info.bioinfweb.libralign.dataarea - package info.bioinfweb.libralign.dataarea: Contains DataArea from which all data areas used in LibrAlign must be inherited as well as related classes and a set of general data area implementations provided with LibrAlign which are located in the subpackage implementations.
info.bioinfweb.libralign.dataarea.implementations - package info.bioinfweb.libralign.dataarea.implementations: Contains classes that implement a concrete data area.
info.bioinfweb.libralign.dataarea.implementations.charset - package info.bioinfweb.libralign.dataarea.implementations.charset: Contains data area related classes to display character sets of an alignment.
info.bioinfweb.libralign.dataarea.implementations.charset.events - package info.bioinfweb.libralign.dataarea.implementations.charset.events: Contains event classes used to report changes in a CharSetDataModel.
info.bioinfweb.libralign.dataarea.implementations.pherogram - package info.bioinfweb.libralign.dataarea.implementations.pherogram: Contains PherogramArea and other classes used in its implementation.
info.bioinfweb.libralign.dataarea.implementations.sequenceindex - package info.bioinfweb.libralign.dataarea.implementations.sequenceindex
info.bioinfweb.libralign.editsettings - package info.bioinfweb.libralign.editsettings: Contains classes implementing the edit settings of an AlignmentContentArea or an MultipleAlignmentsContainer.
info.bioinfweb.libralign.model - package info.bioinfweb.libralign.model: Contains the AlignmentModel interface which is the bridge between LibrAlign and any source of alignment data that is displayed with it as well as related classes and a set of implementations of this interface provided with LibrAlign.
info.bioinfweb.libralign.model.adapters - package info.bioinfweb.libralign.model.adapters: Contains adapter classes that allow to access the data provided by BasicAlignmentModelView in other ways (e.g.
info.bioinfweb.libralign.model.concatenated - package info.bioinfweb.libralign.model.concatenated: Contains the interface ConcatenatedAlignmentModel and related implementations.
info.bioinfweb.libralign.model.data - package info.bioinfweb.libralign.model.data
info.bioinfweb.libralign.model.events - package info.bioinfweb.libralign.model.events: Contains the event objects used by implementations of AlignmentModel.
info.bioinfweb.libralign.model.exception - package info.bioinfweb.libralign.model.exception: Contains exceptions thrown by implementations of AlignmentModel.
info.bioinfweb.libralign.model.factory - package info.bioinfweb.libralign.model.factory: Contains factory classes to create instances of implementations of AlignmentModel.
info.bioinfweb.libralign.model.factory.biojava - package info.bioinfweb.libralign.model.factory.biojava: Contains alignment models working with BioJava Compounds.
info.bioinfweb.libralign.model.factory.continuous - package info.bioinfweb.libralign.model.factory.continuous: Contains factories for alignment models that work with continuous values (e.g.
info.bioinfweb.libralign.model.implementations - package info.bioinfweb.libralign.model.implementations: Contains common implementations of AlignmentModel which are part of LibrAlign.
info.bioinfweb.libralign.model.implementations.decorate - package info.bioinfweb.libralign.model.implementations.decorate
info.bioinfweb.libralign.model.implementations.swingundo - package info.bioinfweb.libralign.model.implementations.swingundo: Contains classes that allow to edit the underlying data source of an implementation of AlignmentModel using swing edit objects (implementations of UndoableEdit).
info.bioinfweb.libralign.model.implementations.swingundo.edits - package info.bioinfweb.libralign.model.implementations.swingundo.edits: Contains the edit objects used by SwingUndoAlignmentModel.
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence - package info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence: Contains the edit objects to manipulate sequences in an implementations of AlignmentModel used by SwingUndoAlignmentModel.
info.bioinfweb.libralign.model.implementations.swingundo.edits.token - package info.bioinfweb.libralign.model.implementations.swingundo.edits.token: Contains the edit objects to manipulate sets of tokens in sequences in an implementations of AlignmentModel used by SwingUndoAlignmentModel.
info.bioinfweb.libralign.model.io - package info.bioinfweb.libralign.model.io
info.bioinfweb.libralign.model.tokenset - package info.bioinfweb.libralign.model.tokenset
info.bioinfweb.libralign.model.tokenset.continuous - package info.bioinfweb.libralign.model.tokenset.continuous: Contains classes implementing token sets for continuous character states (e.g.
info.bioinfweb.libralign.model.utils - package info.bioinfweb.libralign.model.utils: Contains utility classes to be used with implementations of AlignmentModel.
info.bioinfweb.libralign.model.utils.indextranslation - package info.bioinfweb.libralign.model.utils.indextranslation
info.bioinfweb.libralign.multiplealignments - package info.bioinfweb.libralign.multiplealignments: Contains classes used in the implementation of MultipleAlignmentsContainer which allow to combine several AlignmentAreas.
info.bioinfweb.libralign.pherogram - package info.bioinfweb.libralign.pherogram: Contains classes related to storing and displaying a trace file from Sanger sequencing.
info.bioinfweb.libralign.pherogram.distortion - package info.bioinfweb.libralign.pherogram.distortion
info.bioinfweb.libralign.pherogram.model - package info.bioinfweb.libralign.pherogram.model: Contains PherogramProvider and its implementations.
info.bioinfweb.libralign.pherogram.provider - package info.bioinfweb.libralign.pherogram.provider: Contains PherogramProvider and its implementations.
info.bioinfweb.libralign.pherogram.view - package info.bioinfweb.libralign.pherogram.view: Contains classes to display an undistorted pherogram.
INITIAL_LIST_SIZE - Static variable in class info.bioinfweb.libralign.dataarea.DataAreaList
InputEventForwarder - Class in info.bioinfweb.libralign.alignmentarea.content: Forwards key and mouse events received by an AlignmentContentArea to the respective AlignmentSubArea.
InputEventForwarder(AlignmentContentArea) - Constructor for class info.bioinfweb.libralign.alignmentarea.content.InputEventForwarder
insert() - Method in class info.bioinfweb.libralign.model.implementations.swingundo.edits.token.SwingInsertRemoveTokensEdit: Performs the insert operation (either of the new token(s) for insertions or the previously removed token(s) for deletions).
insertChanged(EditSettingsChangeEvent) - Method in interface info.bioinfweb.libralign.editsettings.EditSettingsListener: Called if the insert flag of EditSettings was changed.
insertLeftInDataAreaChanged(EditSettingsChangeEvent) - Method in interface info.bioinfweb.libralign.editsettings.EditSettingsListener: Called if the insertLeftInDataArea flag of EditSettings was changed.
insertPartModel(int, AlignmentModel<?>) - Method in interface info.bioinfweb.libralign.model.concatenated.ConcatenatedAlignmentModel: Inserts an additional part model at the specified position.
insertToken(T) - Method in class info.bioinfweb.libralign.actions.AlignmentActionProvider: Inserts the specified token at the current cursor position specified by selection.
insertTokenAt(String, int, T) - Method in interface info.bioinfweb.libralign.model.AlignmentModel: Inserts a token at the specified position.
insertTokenAt(String, int, T) - Method in class info.bioinfweb.libralign.model.implementations.AbstractListAlignmentModel
insertTokenAt(String, int, T) - Method in class info.bioinfweb.libralign.model.implementations.AbstractUnmodifyableAlignmentModel
insertTokenAt(String, int, T) - Method in class info.bioinfweb.libralign.model.implementations.decorate.AbstractTokenReplacementAlignmentModelDecorator
insertTokenAt(String, int, T) - Method in class info.bioinfweb.libralign.model.implementations.decorate.DelegatedAlignmentModelView
insertTokenAt(String, int, T) - Method in class info.bioinfweb.libralign.model.implementations.swingundo.SwingUndoAlignmentModel
insertTokensAt(String, int, Collection<? extends T>) - Method in interface info.bioinfweb.libralign.model.AlignmentModel: Inserts a sequence of tokens starting at the specified position.
insertTokensAt(String, int, Collection<? extends T>) - Method in class info.bioinfweb.libralign.model.implementations.AbstractListAlignmentModel
insertTokensAt(String, int, Collection<? extends T>) - Method in class info.bioinfweb.libralign.model.implementations.AbstractUnmodifyableAlignmentModel
insertTokensAt(String, int, Collection<? extends T>) - Method in class info.bioinfweb.libralign.model.implementations.decorate.AbstractTokenReplacementAlignmentModelDecorator
insertTokensAt(String, int, Collection<? extends T>) - Method in class info.bioinfweb.libralign.model.implementations.decorate.DelegatedAlignmentModelView
insertTokensAt(String, int, Collection<? extends T>) - Method in class info.bioinfweb.libralign.model.implementations.swingundo.SwingUndoAlignmentModel
InvalidTokenException - Exception in info.bioinfweb.libralign.model.exception: This exceptions is thrown if a token is used with AlignmentModel which does not match the data type of the provide (e.g.
InvalidTokenException(AlignmentModel<?>, Object) - Constructor for exception info.bioinfweb.libralign.model.exception.InvalidTokenException
InvalidTokenRepresentationException - Exception in info.bioinfweb.libralign.model.exception: Indicates that no token associated with a certain string representation was found in a token set.
InvalidTokenRepresentationException(TokenSet<?>, String) - Constructor for exception info.bioinfweb.libralign.model.exception.InvalidTokenRepresentationException
InvalidUnderlyingTokenException - Exception in info.bioinfweb.libralign.model.adapters: Exception that indicates that a token that could not be translated by a SingleSequenceDataAdapter was found.
InvalidUnderlyingTokenException(SingleSequenceDataAdapter<?>, Object, String) - Constructor for exception info.bioinfweb.libralign.model.adapters.InvalidUnderlyingTokenException: Creates a new instance of this class.
IOTools - Class in info.bioinfweb.libralign.model.io: Collection of convenience methods for reading and writing contents of AlignmentModels to file formats supported by JPhyloIO.
IOTools() - Constructor for class info.bioinfweb.libralign.model.io.IOTools
isAlignToFirstColumn() - Method in class info.bioinfweb.libralign.dataarea.implementations.LabelDataArea: Determines whether the start of the text is displayed at the left end of the component or at the left end of the first column of the alignment.
isAlignToScrollPosition() - Method in class info.bioinfweb.libralign.dataarea.implementations.LabelDataArea: Determines whether the start of the text of this component should move if the component is scrolled horizontally.
isAllowUnkownCompounds() - Method in class info.bioinfweb.libralign.model.adapters.SingleBioJava3SequenceAdapter
isAllowVerticalScrolling() - Method in class info.bioinfweb.libralign.alignmentarea.AlignmentArea: Determines whether this area should be displayed with its whole height insight a MultipleAlignmentsContainer if there is enough space available.
isAmbiguity(String) - Method in class info.bioinfweb.libralign.alignmentarea.tokenpainter.AbstractBioPolymerTokenPainter: To be implemented by inherited classes to determine whether the specified token representation is an ambiguity code.
isAmbiguity(String) - Method in class info.bioinfweb.libralign.alignmentarea.tokenpainter.AminoAcidTokenPainter
isAmbiguity(String) - Method in class info.bioinfweb.libralign.alignmentarea.tokenpainter.NucleotideTokenPainter
isChangeZoomXOnMouseWheel() - Method in class info.bioinfweb.libralign.alignmentarea.paintsettings.PaintSettings: Indicates whether the horizontal zoom factor shall be changed, if the user moves the mouse wheel while pressing the control button (or meta button on Macs).
isChangeZoomYOnMouseWheel() - Method in class info.bioinfweb.libralign.alignmentarea.paintsettings.PaintSettings: Indicates whether the vertical zoom factor shall be changed, if the user moves the mouse wheel while pressing the control button (or meta button on Macs).
isCutLongRepresentations() - Method in class info.bioinfweb.libralign.model.adapters.CharSequenceAdapter: Returns true if the first character of string representations (of tokens in the underlying sequence data provider) that are longer than one character shall be used for translations or false if an InvalidUnderlyingTokenException shall be thrown if such a token occurs.
isCutLongRepresentations() - Method in class info.bioinfweb.libralign.model.adapters.SingleCharSequenceAdapter: The return values indicates whether string representations of tokens that are not exactly one character long are allowed.
isDefaultTokenUsed() - Method in class info.bioinfweb.libralign.model.utils.CharSequenceTokenScanner: Indicates whether a string representation not found in the token set was replaced by the default token in any call of CharSequenceTokenScanner.next() until now.
isDefaultTokenUsedNow() - Method in class info.bioinfweb.libralign.model.utils.CharSequenceTokenScanner: Indicates whether a string representation not found in the token set was replaced by the default token in the last call of CharSequenceTokenScanner.next().
isDistinguishCase() - Method in class info.bioinfweb.libralign.model.factory.BioPolymerCharAlignmentModelFactory: Determines whether alignment models created by this instance should distinguish between upper and lower case letters or not.
isDistributeRemainingSpace() - Method in class info.bioinfweb.libralign.multiplealignments.MultipleAlignmentsContainer: Returns whether remaining space shall be distributed among all scrollable alignments.
isEmpty() - Method in class info.bioinfweb.libralign.alignmentarea.paintsettings.TokenPainterList: Checks whether this list contains any painters.
isEmpty() - Method in class info.bioinfweb.libralign.alignmentarea.selection.OneDimensionalSelection: Checks if any columns or row (depending on OneDimensionalSelection.getDimension()) is selected.
isEmpty() - Method in class info.bioinfweb.libralign.alignmentarea.selection.SelectionModel: Checks if any columns or rows are currently selected.
isEmpty() - Method in class info.bioinfweb.libralign.alignmentarea.selection.SelectionSynchronizer
isEmpty() - Method in class info.bioinfweb.libralign.dataarea.DataAreaChangeEventList
isEmpty() - Method in class info.bioinfweb.libralign.model.tokenset.continuous.AbstractContinuousSet: This default implementation always returns false.
isEnabled() - Method in class info.bioinfweb.libralign.alignmentarea.selection.SelectionSynchronizer
isEventsFromSingleList() - Method in class info.bioinfweb.libralign.dataarea.DataAreaChangeEvent: Returns if all elements in DataAreaChangeEvent.getAffectedElements() are contained in the same DataAreaList.
isGap(int) - Method in class info.bioinfweb.libralign.pherogram.distortion.GapPattern: Indicates whether a gap is located at the specified position.
isGapToken(T) - Method in class info.bioinfweb.libralign.model.tokenset.AbstractTokenSet: Default implementation that tests of the string representation of the specified token is equal to "".
isGapToken(C) - Method in class info.bioinfweb.libralign.model.tokenset.BioJava3TokenSet
isGapToken(ContinuousToken<T>) - Method in class info.bioinfweb.libralign.model.tokenset.continuous.AbstractContinuousSet
isGapToken(T) - Method in interface info.bioinfweb.libralign.model.tokenset.TokenSet: Tests if the specified token represents a gap.
isGapToken(TokenSet<T>, T) - Static method in class info.bioinfweb.libralign.model.tokenset.TokenSetTools: Tests if the specified token represents a gap in the specified token set.
isHideHorizontalBar() - Method in class info.bioinfweb.libralign.alignmentarea.SWTScrollableResizeListener
isHideHorizontalScrollBar() - Method in class info.bioinfweb.libralign.alignmentarea.AbstractSWTAlignmentArea
isHideVerticalBar() - Method in class info.bioinfweb.libralign.alignmentarea.SWTScrollableResizeListener
isInsert() - Method in class info.bioinfweb.libralign.editsettings.EditSettings
isInsertLeftInDataArea() - Method in class info.bioinfweb.libralign.editsettings.EditSettings: Determines whether data areas displaying content that is aligned to the sequence they are attached to shall insert additional space on the left or the right if a new token is inserted into the sequence that carries the data area.
isLastEvent() - Method in class info.bioinfweb.libralign.dataarea.implementations.charset.events.CharSetDataModelChangeEvent: Determines whether this event is the last in a possible row of events triggered by a single operation.
isLinkOTUs() - Method in class info.bioinfweb.libralign.model.io.AlignmentModelDataAdapter
isMissingInformationToken(T) - Method in class info.bioinfweb.libralign.model.tokenset.AbstractTokenSet
isMissingInformationToken(C) - Method in class info.bioinfweb.libralign.model.tokenset.BioJava3TokenSet
isMissingInformationToken(ContinuousToken<T>) - Method in class info.bioinfweb.libralign.model.tokenset.continuous.AbstractContinuousSet
isMissingInformationToken(T) - Method in interface info.bioinfweb.libralign.model.tokenset.TokenSet: Tests if the specified token represents an unknown position (usually '?').
isMissingInformationToken(TokenSet<T>, T) - Static method in class info.bioinfweb.libralign.model.tokenset.TokenSetTools: Tests if the specified token represents missing data in the specified token set.
isMoreEventsUpcoming() - Method in class info.bioinfweb.libralign.pherogram.model.PherogramModelChangeEvent: Indicates whether the currently terminated operation affected additional properties and is going to fire more events for these right after this event.
isProviderInstanceChange() - Method in class info.bioinfweb.libralign.pherogram.model.PherogramProviderChangeEvent: Tests if this event indicates a substitution or an edit of the pherogram provider instance referenced by PherogramModelChangeEvent.getSource().
isPublishOnAlignmentEnd() - Method in class info.bioinfweb.libralign.dataarea.implementations.charset.CharSetEventReader: Determines whether loaded models should be published when reading their associated alignment is finished or not.
isReuseSequenceIDs() - Method in class info.bioinfweb.libralign.model.factory.AbstractAlignmentModelFactory: Determines whether models created by this factory should reuse IDs already present in their associated ID manager or should always create new IDs.
isReuseSequenceIDs() - Method in class info.bioinfweb.libralign.model.implementations.AbstractUndecoratedAlignmentModel: Determines whether new sequence IDs should be created each time a new sequence is added or if existing IDs already present for a specified name in the ID manager should be reused.
isReverseComplemented() - Method in class info.bioinfweb.libralign.pherogram.model.PherogramProviderChangeEvent: Returns if this event occurred due to a reverse complement operation.
isSelected(int) - Method in class info.bioinfweb.libralign.alignmentarea.selection.OneDimensionalSelection: Checks if the specified column (or row) is included in this selection.
isSelected(int, int) - Method in class info.bioinfweb.libralign.alignmentarea.selection.SelectionModel: Checks if the specified cell is contained in this selection.
isSequencesReadOnly() - Method in interface info.bioinfweb.libralign.model.AlignmentModel: Checks of whole sequences can be changed in the underlying data source
isSequencesReadOnly() - Method in class info.bioinfweb.libralign.model.implementations.AbstractUndecoratedAlignmentModel
isSequencesReadOnly() - Method in class info.bioinfweb.libralign.model.implementations.decorate.AbstractAlignmentModelDecorator
isSequencesReadOnly() - Method in class info.bioinfweb.libralign.model.implementations.decorate.DelegatedAlignmentModelView
isSequencesReadOnly() - Method in class info.bioinfweb.libralign.model.implementations.swingundo.SwingUndoAlignmentModel
isShowBaseCallLines() - Method in class info.bioinfweb.libralign.pherogram.PherogramFormats: Determines if base call lines (vertical lines at each base call position in the background of the trace curve output) shall be painted.
isShowProbabilityValues() - Method in class info.bioinfweb.libralign.pherogram.PherogramFormats: Determines whether probability values (substitution, overcall and undercall) should be displayed in the pherogram heading.
isSpaceForGap() - Method in class info.bioinfweb.libralign.model.tokenset.AbstractTokenSet
isSpaceForGap() - Method in class info.bioinfweb.libralign.model.tokenset.BioJava3TokenSet
isSpaceForGap() - Method in class info.bioinfweb.libralign.model.tokenset.continuous.AbstractContinuousSet
isSpaceForGap() - Method in interface info.bioinfweb.libralign.model.tokenset.TokenSet: Determines whether TokenSet.tokenByKeyStroke(KeyStroke) shall return the gap token, if the space bar is pressed, even if that key stroke is not associated with that token.
isTokensReadOnly() - Method in interface info.bioinfweb.libralign.model.AlignmentModel: Checks of tokens can be changed in the underlying data source
isTokensReadOnly() - Method in class info.bioinfweb.libralign.model.implementations.AbstractUndecoratedAlignmentModel
isTokensReadOnly() - Method in class info.bioinfweb.libralign.model.implementations.decorate.AbstractTokenReplacementAlignmentModelDecorator
isTokensReadOnly() - Method in class info.bioinfweb.libralign.model.implementations.decorate.DelegatedAlignmentModelView
isTokensReadOnly() - Method in class info.bioinfweb.libralign.model.implementations.swingundo.SwingUndoAlignmentModel
isUpdateEditableSequence() - Method in class info.bioinfweb.libralign.dataarea.implementations.pherogram.PherogramArea: Indicates whether the editable sequence should be updated if the cut positions of the model are modified.
isUseMaxLength() - Method in class info.bioinfweb.libralign.model.implementations.AbstractListAlignmentModel: Determines if the initial capacity of newly generated list objects shall only depend on the default capacity or also on the maximum length of the other lists already contained in this provider.
isVisibilityUpdateInProgress() - Method in class info.bioinfweb.libralign.dataarea.DataAreasModel: Returns true if informing listeners about visibility changes of data areas currently disabled.
isVisible() - Method in class info.bioinfweb.libralign.dataarea.DataArea: Indicates whether this data area is currently faded in or out in the containing alignment area.
isZoomXChange() - Method in class info.bioinfweb.libralign.alignmentarea.paintsettings.ZoomChangeEvent
isZoomYChange() - Method in class info.bioinfweb.libralign.alignmentarea.paintsettings.ZoomChangeEvent
iterator() - Method in class info.bioinfweb.libralign.alignmentarea.paintsettings.TokenPainterList: Returns an unmodifiable iterator over all painter of this list.
iterator() - Method in class info.bioinfweb.libralign.dataarea.DataAreaChangeEventList
iterator() - Method in class info.bioinfweb.libralign.model.adapters.SingleBioJava3SequenceAdapter
iterator() - Method in class info.bioinfweb.libralign.model.tokenset.BioJava3TokenSet: Returns an unmodifiable iterator of the underlying BioJava compound set.
iterator() - Method in class info.bioinfweb.libralign.model.tokenset.continuous.AbstractContinuousSet: Continuous sets cannot be iterated, therefore this method is not supported by this class.

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