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U

underlyingModel - Variable in class info.bioinfweb.libralign.model.implementations.swingundo.SwingUndoAlignmentModel

undo() - Method in class info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.SwingConcreteAddSequenceEdit

undo() - Method in class info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.SwingRemoveSequenceEdit

undo() - Method in class info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.SwingRenameSequenceEdit

undo() - Method in class info.bioinfweb.libralign.model.implementations.swingundo.edits.token.SwingInsertTokensEdit

undo() - Method in class info.bioinfweb.libralign.model.implementations.swingundo.edits.token.SwingRemoveTokensEdit

undo() - Method in class info.bioinfweb.libralign.model.implementations.swingundo.edits.token.SwingSetTokensEdit

UnscaledPherogramDistortion - Class in info.bioinfweb.libralign.pherogram.distortion

Implementation that does not scale the pherogram or insert any gaps.

UnscaledPherogramDistortion(double, PherogramProvider) - Constructor for class info.bioinfweb.libralign.pherogram.distortion.UnscaledPherogramDistortion

updateElements() - Method in class info.bioinfweb.libralign.alignmentarea.content.SequenceAreaMap

Removes sequence areas for sequences that are not present anymore in the linked AlignmentModel and adds new sequence areas for new sequences in the provider which were not present at the last call of this method.

updateSubelements() - Method in class info.bioinfweb.libralign.alignmentarea.AlignmentArea

Reinserts subelements in the contained label and content areas if they already have created a toolkit specific component.

updateSubelements() - Method in class info.bioinfweb.libralign.alignmentarea.content.AlignmentContentArea

updateUI() - Method in class info.bioinfweb.libralign.pherogram.view.PherogramTraceCurveView

Resizes and repaints this component and the associated heading component.

URACILE - Static variable in class info.bioinfweb.libralign.model.utils.AlignmentModelUtils

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