Uses of Interface
info.bioinfweb.jphyloio.dataadapters.TreeNetworkDataAdapter

Packages that use TreeNetworkDataAdapter

Package	Description
info.bioinfweb.jphyloio.dataadapters	Contains adapter interfaces that should be implemented by adapters mediating between the business model of an application and implementations of JPhyloIOEventWriter.
info.bioinfweb.jphyloio.dataadapters.implementations	Contains some basic (abstract) implementations of JPhyloIOEventWriter.
info.bioinfweb.jphyloio.dataadapters.implementations.store	Contains implementations of data adapters that directly store their modeled data in mutable lists or maps instead of delegating to an application business model.
info.bioinfweb.jphyloio.formats.newick	Contains classes for reading from and writing to streams/files in Newick tree format.
info.bioinfweb.jphyloio.utils	Contains general tool classes of JPhyloIO.

Uses of TreeNetworkDataAdapter in info.bioinfweb.jphyloio.dataadapters

Methods in info.bioinfweb.jphyloio.dataadapters that return types with arguments of type TreeNetworkDataAdapter

Modifier and Type	Method and Description
java.util.Iterator<TreeNetworkDataAdapter>	TreeNetworkGroupDataAdapter.getTreeNetworkIterator(ReadWriteParameterMap parameters) Returns an iterator providing access to all trees and networks contained in the document to be written.

Uses of TreeNetworkDataAdapter in info.bioinfweb.jphyloio.dataadapters.implementations

Classes in info.bioinfweb.jphyloio.dataadapters.implementations that implement TreeNetworkDataAdapter

Modifier and Type	Class and Description
class	NoSetsTreeNetworkDataAdapter Abstract implementation of TreeNetworkDataAdapter, which returns an empty object list adapter for NoSetsTreeNetworkDataAdapter.getNodeEdgeSets(ReadWriteParameterMap).

Uses of TreeNetworkDataAdapter in info.bioinfweb.jphyloio.dataadapters.implementations.store

Classes in info.bioinfweb.jphyloio.dataadapters.implementations.store that implement TreeNetworkDataAdapter

Modifier and Type	Class and Description
class	StoreTreeNetworkDataAdapter

Methods in info.bioinfweb.jphyloio.dataadapters.implementations.store that return types with arguments of type TreeNetworkDataAdapter

Modifier and Type	Method and Description
java.util.Iterator<TreeNetworkDataAdapter>	StoreTreeNetworkGroupDataAdapter.getTreeNetworkIterator(ReadWriteParameterMap parameters)
java.util.List<TreeNetworkDataAdapter>	StoreTreeNetworkGroupDataAdapter.getTreesAndNetworks()

Uses of TreeNetworkDataAdapter in info.bioinfweb.jphyloio.formats.newick

Constructors in info.bioinfweb.jphyloio.formats.newick with parameters of type TreeNetworkDataAdapter

Constructor and Description
NewickStringWriter(TextWriterStreamDataProvider<?> streamDataProvider, TreeNetworkDataAdapter tree, NewickWriterNodeLabelProcessor nodeLabelProcessor, ReadWriteParameterMap parameters) Creates a new instance of this class.

Uses of TreeNetworkDataAdapter in info.bioinfweb.jphyloio.utils

Constructors in info.bioinfweb.jphyloio.utils with parameters of type TreeNetworkDataAdapter

Constructor and Description
TreeTopologyExtractor(TreeNetworkDataAdapter adapter, ReadWriteParameterMap parameters)