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U

UNDEFINED_OTU_ID_PREFIX - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants

UNDEFINED_OTU_LABEL - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants

UNDEFINED_OTUS_ID_PREFIX - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants

UNDEFINED_OTUS_LABEL - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants

UndefinedOTUListDataAdapter - Class in info.bioinfweb.jphyloio.dataadapters.implementations

UndefinedOTUListDataAdapter(String, String) - Constructor for class info.bioinfweb.jphyloio.dataadapters.implementations.UndefinedOTUListDataAdapter

UNKNOWN_CHARS - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants

UnknownCommandEvent - Class in info.bioinfweb.jphyloio.events

Event to be fired, if an unknown command was found (e.g.

UnknownCommandEvent(String, String) - Constructor for class info.bioinfweb.jphyloio.events.UnknownCommandEvent

Creates a new instance of this class.

UNROOTED_HOT_COMMENT - Static variable in interface info.bioinfweb.jphyloio.formats.newick.NewickConstants

UnsupportedFormatFeatureException - Exception in info.bioinfweb.jphyloio.exception

This exception is thrown by implementations of JPhyloIOEventReader if a feature of their format is encountered that is not supported by this reader.

UnsupportedFormatFeatureException(String, Location, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.UnsupportedFormatFeatureException

UnsupportedFormatFeatureException(String, Location) - Constructor for exception info.bioinfweb.jphyloio.exception.UnsupportedFormatFeatureException

UnsupportedFormatFeatureException(String, long, long, long, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.UnsupportedFormatFeatureException

UnsupportedFormatFeatureException(String, long, long, long) - Constructor for exception info.bioinfweb.jphyloio.exception.UnsupportedFormatFeatureException

UnsupportedFormatFeatureException(String, StreamLocationProvider, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.UnsupportedFormatFeatureException

UnsupportedFormatFeatureException(String, StreamLocationProvider) - Constructor for exception info.bioinfweb.jphyloio.exception.UnsupportedFormatFeatureException

UnsupportedFormatFeatureException(String, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.UnsupportedFormatFeatureException

UNTIL_WHITESPACE_COMMENT_COMMAND_EQUAL_PATTERN - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants

UNTIL_WHITESPACE_COMMENT_COMMAND_PATTERN - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants

URIOrStringIdentifier - Class in info.bioinfweb.jphyloio.events.meta

URIOrStringIdentifier(String, QName) - Constructor for class info.bioinfweb.jphyloio.events.meta.URIOrStringIdentifier

URITranslator - Class in info.bioinfweb.jphyloio.objecttranslation.implementations

An object translator from and to URI.

URITranslator() - Constructor for class info.bioinfweb.jphyloio.objecttranslation.implementations.URITranslator

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