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handleBegin(NexusReaderStreamDataProvider) - Method in class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.CharactersDataUnalignedBlockHandler
 
handleBegin(NexusReaderStreamDataProvider) - Method in interface info.bioinfweb.jphyloio.formats.nexus.blockhandlers.NexusBlockHandler
This method will be called by NexusEventReader each time a BEGIN command for a block listed in NexusBlockHandler.getBlockNames() is read.
handleBegin(NexusReaderStreamDataProvider) - Method in class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.TaxaBlockHandler
 
handleBegin(NexusReaderStreamDataProvider) - Method in class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.TreesBlockHandler
 
handleCharacterSetInterval(CharacterSetIntervalEvent) - Method in class info.bioinfweb.jphyloio.formats.nexus.receivers.AbstractNexusSetsEventReceiver
This method is called every time a CharacterSetIntervalEvent is encountered on the top level by this receiver.
handleCharacterSetInterval(CharacterSetIntervalEvent) - Method in class info.bioinfweb.jphyloio.formats.nexus.receivers.CharacterSetEventReceiver
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.dataadapters.implementations.receivers.BasicEventReceiver
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.formats.newick.NewickNodeEdgeEventReceiver
 
handleComment(NeXMLWriterStreamDataProvider, CommentEvent) - Static method in class info.bioinfweb.jphyloio.formats.nexml.receivers.AbstractNeXMLDataReceiverMixin
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLAttributeMetadataReceiver
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectNamespaceReceiver
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectSetMetadataReceiver
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLIgnoreCertainMetadataReceiver
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLMetaDataReceiver
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLMolecularDataTokenDefinitionReceiver
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLSequenceTokensReceiver
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLCollectMetadataDataReceiver
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.formats.text.BasicTextCommentEventReceiver
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.formats.text.TextSequenceContentReceiver
 
handleComment(CommentEvent) - Method in class info.bioinfweb.jphyloio.formats.xml.receivers.AbstractXMLDataReceiver
 
handleEnd(NexusReaderStreamDataProvider) - Method in class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.CharactersDataUnalignedBlockHandler
 
handleEnd(NexusReaderStreamDataProvider) - Method in interface info.bioinfweb.jphyloio.formats.nexus.blockhandlers.NexusBlockHandler
This method will be called by NexusEventReader each time an END command for a block listed in NexusBlockHandler.getBlockNames() is read.
handleEnd(NexusReaderStreamDataProvider) - Method in class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.TaxaBlockHandler
 
handleEnd(NexusReaderStreamDataProvider) - Method in class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.TreesBlockHandler
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.dataadapters.implementations.receivers.BasicEventReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.newick.NewickNodeEdgeEventReceiver
 
handleLiteralContentMeta(NeXMLWriterStreamDataProvider, ReadWriteParameterMap, LiteralMetadataContentEvent) - Static method in class info.bioinfweb.jphyloio.formats.nexml.receivers.AbstractNeXMLDataReceiverMixin
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLAttributeMetadataReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectNamespaceReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectSequenceDataReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectSetMetadataReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLIgnoreCertainMetadataReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLMetaDataReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLMolecularDataTokenDefinitionReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLSequenceTokensReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLCollectMetadataDataReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLMetaDataReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLOnlyCustomXMLDataReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLPropertyMetadataReceiver
 
handleLiteralContentMeta(LiteralMetadataContentEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLSpecificPredicatesDataReceiver
 
handleLiteralMeta(NeXMLWriterStreamDataProvider, LiteralMetadataEvent) - Static method in class info.bioinfweb.jphyloio.formats.nexml.receivers.AbstractNeXMLDataReceiverMixin
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.dataadapters.implementations.receivers.BasicEventReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.newick.NewickNodeEdgeEventReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLAttributeMetadataReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectNamespaceReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectSequenceDataReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectSetMetadataReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLIgnoreCertainMetadataReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLMetaDataReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLMolecularDataTokenDefinitionReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLSequenceTokensReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLCollectMetadataDataReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLMetaDataReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLPropertyMetadataReceiver
 
handleLiteralMetaStart(LiteralMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLSpecificPredicatesDataReceiver
In this method LiteralMetadataEvents are processed.
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.dataadapters.implementations.receivers.BasicEventReceiver
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.newick.NewickNodeEdgeEventReceiver
 
handleMetaEndEvent(NeXMLWriterStreamDataProvider, JPhyloIOEvent) - Static method in class info.bioinfweb.jphyloio.formats.nexml.receivers.AbstractNeXMLDataReceiverMixin
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLAttributeMetadataReceiver
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectNamespaceReceiver
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectSetMetadataReceiver
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLIgnoreCertainMetadataReceiver
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLMetaDataReceiver
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLMolecularDataTokenDefinitionReceiver
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLSequenceTokensReceiver
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLCollectMetadataDataReceiver
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLMetaDataReceiver
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLOnlyCustomXMLDataReceiver
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLPropertyMetadataReceiver
 
handleMetaEndEvent(JPhyloIOEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLSpecificPredicatesDataReceiver
 
handleResourceMeta(NeXMLWriterStreamDataProvider, ResourceMetadataEvent) - Static method in class info.bioinfweb.jphyloio.formats.nexml.receivers.AbstractNeXMLDataReceiverMixin
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.dataadapters.implementations.receivers.BasicEventReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLAttributeMetadataReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectNamespaceReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectSequenceDataReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectSetMetadataReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLIgnoreCertainMetadataReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLMetaDataReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLMolecularDataTokenDefinitionReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLSequenceTokensReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLCollectMetadataDataReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLMetaDataReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLOnlyCustomXMLDataReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLPropertyMetadataReceiver
 
handleResourceMetaStart(ResourceMetadataEvent) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLSpecificPredicatesDataReceiver
 
handleSetElement(SetElementEvent) - Method in class info.bioinfweb.jphyloio.formats.nexus.receivers.AbstractNexusSetsEventReceiver
This method is called every time a SetElementEvent is encountered on the top level by this receiver and must be implemented by inherited classes.
handleSetElement(SetElementEvent) - Method in class info.bioinfweb.jphyloio.formats.nexus.receivers.CharacterSetEventReceiver
 
handleSetElement(SetElementEvent) - Method in class info.bioinfweb.jphyloio.formats.nexus.receivers.ReferenceOnlySetReceiver
 
handleToken(String, String) - Method in class info.bioinfweb.jphyloio.dataadapters.implementations.receivers.AbstractSequenceContentReceiver
 
handleToken(String, String) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLCollectSequenceDataReceiver
 
handleToken(String, String) - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLSequenceTokensReceiver
 
handleToken(String, String) - Method in class info.bioinfweb.jphyloio.formats.text.TextSequenceContentReceiver
Creates a new instance of this class.
handleTokenEnd() - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLHandleSequenceDataReceiver
 
handleTokenEnd() - Method in class info.bioinfweb.jphyloio.formats.nexml.receivers.NeXMLSequenceTokensReceiver
 
hasAlternativeStringValue() - Method in class info.bioinfweb.jphyloio.events.meta.LiteralMetadataEvent
Determines whether an alternative string representation is available for the value modeled by the following sequence of LiteralMetadataContentEvents.
hasConstituents() - Method in class info.bioinfweb.jphyloio.events.SingleTokenDefinitionEvent
Returns true if a collection of constituents is specified for this token or false if it is not.
hasDefaultBlockID(String) - Method in class info.bioinfweb.jphyloio.formats.nexus.commandreaders.all.BlockTitleToIDMap
 
hasHandler(String) - Method in class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.NexusBlockHandlerMap
Checks whether a handler for the specified block name is contained in this map.
hashCode() - Method in class info.bioinfweb.jphyloio.events.meta.URIOrStringIdentifier
 
hashCode() - Method in class info.bioinfweb.jphyloio.events.type.EventType
 
hashCode() - Method in class info.bioinfweb.jphyloio.formats.xml.elementreaders.XMLElementReaderKey
 
hashCode() - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.AbstractObjectTranslator
 
hasIncompleteToken() - Method in class info.bioinfweb.jphyloio.formats.xml.XMLReaderStreamDataProvider
 
hasLabel() - Method in class info.bioinfweb.jphyloio.events.LabeledEvent
Indicates whether the modeled data element carries a label.
hasLength() - Method in class info.bioinfweb.jphyloio.events.EdgeEvent
Indicates whether this edge has a defined length.
hasLink() - Method in interface info.bioinfweb.jphyloio.events.LinkedIDEvent
Indicates whether this event links another data element.
hasLink() - Method in class info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent
Indicates whether this event links another data element.
hasLink() - Method in class info.bioinfweb.jphyloio.events.SetElementEvent
This method is present to fully implement LinkedIDEvent.
hasMetadata() - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLCollectMetadataDataReceiver
 
hasMetadataToWrite() - Method in class info.bioinfweb.jphyloio.formats.newick.NewickNodeEdgeEventReceiver
Determines whether this receiver currently stores metadata to be written into a Newick/Nexus hot comment.
hasMoreTokens() - Method in class info.bioinfweb.jphyloio.formats.newick.NewickScanner
 
hasName() - Method in class info.bioinfweb.jphyloio.formats.xml.stax.MetaXMLStreamReader
 
hasNext() - Method in class info.bioinfweb.jphyloio.formats.xml.stax.AbstractMetaXMLReader
 
hasNextEvent() - Method in class info.bioinfweb.jphyloio.AbstractEventReader
 
hasNextEvent() - Method in interface info.bioinfweb.jphyloio.JPhyloIOEventReader
Checks if another event could be parsed from the underlying document.
hasObjectValue() - Method in class info.bioinfweb.jphyloio.events.meta.LiteralMetadataContentEvent
Determines whether this instance carries a Java object of the metadata element it models.
hasOTUList() - Method in class info.bioinfweb.jphyloio.formats.nexml.NeXMLWriterStreamDataProvider
 
hasReader() - Method in interface info.bioinfweb.jphyloio.factory.SingleReaderWriterFactory
Determines whether this factory is able to create reader instances for its target format.
hasReader() - Method in class info.bioinfweb.jphyloio.formats.fasta.FASTAFactory
 
hasReader() - Method in class info.bioinfweb.jphyloio.formats.mega.MEGAFactory
 
hasReader() - Method in class info.bioinfweb.jphyloio.formats.newick.NewickFactory
 
hasReader() - Method in class info.bioinfweb.jphyloio.formats.nexml.NeXMLFactory
 
hasReader() - Method in class info.bioinfweb.jphyloio.formats.nexus.NexusFactory
 
hasReader() - Method in class info.bioinfweb.jphyloio.formats.pde.PDEFactory
 
hasReader() - Method in class info.bioinfweb.jphyloio.formats.phylip.AbstractPhylipFactory
 
hasReader() - Method in class info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLFactory
 
hasReader() - Method in class info.bioinfweb.jphyloio.formats.xtg.XTGFactory
 
hasSimpleContent() - Method in class info.bioinfweb.jphyloio.formats.phyloxml.receivers.PhyloXMLMetaDataReceiver
 
hasSource() - Method in class info.bioinfweb.jphyloio.events.EdgeEvent
Indicates whether this edge has a source node and can therefore be considered a root edge.
hasSpecialEventCollection() - Method in class info.bioinfweb.jphyloio.AbstractEventReader
Determines whether the current event collection is different from the queue of upcoming events.
hasSpecialEventCollection() - Method in class info.bioinfweb.jphyloio.ReaderStreamDataProvider
Determines whether the current event collection is different from the queue of upcoming events.
hasStringRepresentation() - Method in class info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLColorTranslator
 
hasStringRepresentation() - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.AbstractXMLObjectTranslator
 
hasStringRepresentation() - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.SimpleValueTranslator
 
hasStringRepresentation() - Method in interface info.bioinfweb.jphyloio.objecttranslation.ObjectTranslator
Determines whether the objects handled by this instance have a simple string representation or need a more complex XML representation.
hasStringValue() - Method in class info.bioinfweb.jphyloio.events.meta.LiteralMetadataContentEvent
Determines whether this instance carries a string representation of the metadata element it models.
hasText() - Method in class info.bioinfweb.jphyloio.formats.xml.stax.MetaXMLStreamReader
 
hasTokenDefinitionSet() - Method in class info.bioinfweb.jphyloio.formats.nexml.NeXMLWriterAlignmentInformation
 
hasTreeGroupMetadata() - Method in class info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLWriterStreamDataProvider
 
hasWriter() - Method in interface info.bioinfweb.jphyloio.factory.SingleReaderWriterFactory
Determines whether this factory is able to create writer instances for its target format.
hasWriter() - Method in class info.bioinfweb.jphyloio.formats.fasta.FASTAFactory
 
hasWriter() - Method in class info.bioinfweb.jphyloio.formats.mega.MEGAFactory
 
hasWriter() - Method in class info.bioinfweb.jphyloio.formats.newick.NewickFactory
 
hasWriter() - Method in class info.bioinfweb.jphyloio.formats.nexml.NeXMLFactory
 
hasWriter() - Method in class info.bioinfweb.jphyloio.formats.nexus.NexusFactory
 
hasWriter() - Method in class info.bioinfweb.jphyloio.formats.pde.PDEFactory
 
hasWriter() - Method in class info.bioinfweb.jphyloio.formats.phylip.AbstractPhylipFactory
 
hasWriter() - Method in class info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLFactory
 
hasWriter() - Method in class info.bioinfweb.jphyloio.formats.xtg.XTGFactory
 
hasXMLEventValue() - Method in class info.bioinfweb.jphyloio.events.meta.LiteralMetadataContentEvent
Determines whether this instance carries an XMLEvent as its object value.
HexadecimalColorTranslator - Class in info.bioinfweb.jphyloio.objecttranslation.implementations
Converts between instances of Color and their hexadecimal representation (e.g.
HexadecimalColorTranslator() - Constructor for class info.bioinfweb.jphyloio.objecttranslation.implementations.HexadecimalColorTranslator
 
HexBinaryTranslator - Class in info.bioinfweb.jphyloio.objecttranslation.implementations
An object translator between byte[] and xsd:hexBinary.
HexBinaryTranslator() - Constructor for class info.bioinfweb.jphyloio.objecttranslation.implementations.HexBinaryTranslator
 
HOT_COMMENT_START_SYMBOL - Static variable in interface info.bioinfweb.jphyloio.formats.newick.NewickConstants
 
HotCommentDataReader - Class in info.bioinfweb.jphyloio.formats.newick
Reads meta information from a hot comment in a Newick string like it is generated by MrBayes or BEAST.
HotCommentDataReader() - Constructor for class info.bioinfweb.jphyloio.formats.newick.HotCommentDataReader
 
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