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javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLColorTranslator

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.AbstractXMLObjectTranslator

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.Base64BinaryTranslator

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.ColorTranslator

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.DateTimeTranslator

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.DateTranslator

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.EnumTranslator

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.HexadecimalColorTranslator

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.HexBinaryTranslator

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.ListTranslator

Creates the string representation of a simple value list from any object that implements Iterable.

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.QNameTranslator

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.SimpleValueTranslator

Converts the object by invoking its Object.toString() method.

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.StringTranslator

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.TimeTranslator

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in interface info.bioinfweb.jphyloio.objecttranslation.ObjectTranslator

Converts the specified Java object to its string representation.

JPhyloIO - Class in info.bioinfweb.jphyloio

Singleton main class that provides information about this library at runtime.

JPHYLOIO_ATTRIBUTES_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants

JPHYLOIO_ATTRIBUTES_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants

JPHYLOIO_DATA_TYPE_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants

The namespace for data types defined in JPhyloIO.

JPHYLOIO_DATA_TYPE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants

The default namespace prefix for ReadWriteConstants.JPHYLOIO_DATA_TYPE_NAMESPACE.

JPHYLOIO_FORMATS_NAMESPACE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants

JPHYLOIO_GENERAL_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants

JPHYLOIO_NAMESPACE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants

JPHYLOIO_PHYLOXML_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants

JPHYLOIO_PREDICATE_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants

JPHYLOIO_PREDICATE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants

JPhyloIOContentExtensionFileFilter - Class in info.bioinfweb.jphyloio.factory

JPhyloIOContentExtensionFileFilter(SingleReaderWriterFactory, ReadWriteParameterMap, String, boolean, ContentExtensionFileFilter.TestStrategy, boolean, String...) - Constructor for class info.bioinfweb.jphyloio.factory.JPhyloIOContentExtensionFileFilter

JPhyloIOEvent - Interface in info.bioinfweb.jphyloio.events

This interface is implemented by all events generated by implementations of JPhyloIOEventReader.

JPhyloIOEventListener - Interface in info.bioinfweb.jphyloio.push

Interface to be implemented by classes that listen to JPhyloIOEvents.

JPhyloIOEventReader - Interface in info.bioinfweb.jphyloio

This is main JPhyloIO interface to be implemented by all format specific event readers.

JPhyloIOEventReceiver - Interface in info.bioinfweb.jphyloio.dataadapters

Implementations of this interface are used by JPhyloIO writers to receive events from the application (generated from its business model).

JPhyloIOEventWriter - Interface in info.bioinfweb.jphyloio

The main JPhyloIO interface to be implemented by all format specific event writers.

JPhyloIOFormatIDs - Interface in info.bioinfweb.jphyloio.formats

Provides unique IDs for all formats that are supported by JPhyloIO.

JPhyloIOFormatInfo - Interface in info.bioinfweb.jphyloio.formatinfo

Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.

JPhyloIOFormatSpecificObject - Interface in info.bioinfweb.jphyloio

Interface to be implemented by all format-specific classes (e.g.

JPhyloIOReaderException - Exception in info.bioinfweb.jphyloio.exception

Exception thrown by implementations of JPhyloIOEventReader, if an error during reading occurs.

JPhyloIOReaderException(String, long, long, long, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException

JPhyloIOReaderException(String, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException

JPhyloIOReaderException(String, long, long, long) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException

JPhyloIOReaderException(String, Location, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException

JPhyloIOReaderException(String, Location) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException

JPhyloIOReaderException(String, StreamLocationProvider, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException

JPhyloIOReaderException(String, StreamLocationProvider) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException

JPhyloIOReaderWriterFactory - Class in info.bioinfweb.jphyloio.factory

Factory to create instances of JPhyloIO event readers and writers as well as JPhyloIOFormatInfo instances.

JPhyloIOReaderWriterFactory() - Constructor for class info.bioinfweb.jphyloio.factory.JPhyloIOReaderWriterFactory

Returns a new instance of this class, which supports all build-in readers and writers of JPhyloIO with a buffer size as defined by JPhyloIOReaderWriterFactory.DEFAULT_READ_AHEAD_LIMIT.

JPhyloIOReadingUtils - Class in info.bioinfweb.jphyloio.utils

Provides tool methods to be used by application developers when implementing a reader class that processes events from an implementations of JPhyloIOEventReader and stores relevant content in the application business model.

JPhyloIOReadingUtils() - Constructor for class info.bioinfweb.jphyloio.utils.JPhyloIOReadingUtils

JPhyloIOWriterException - Exception in info.bioinfweb.jphyloio.exception

Exception thrown by implementations of JPhyloIOEventWriter, if an error during writing occurs.

JPhyloIOWriterException() - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException

JPhyloIOWriterException(String, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException

JPhyloIOWriterException(String) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException

JPhyloIOWriterException(Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException

JPhyloIOWritingUtils - Class in info.bioinfweb.jphyloio.utils

JPhyloIOWritingUtils() - Constructor for class info.bioinfweb.jphyloio.utils.JPhyloIOWritingUtils

JPhyloIOXMLEventReader - Interface in info.bioinfweb.jphyloio.formats.xml

Interface providing basic functionality for all JPhyloIO readers of XML formats.

JPhyloIOXMLEventWriter - Interface in info.bioinfweb.jphyloio.formats.xml

Interface providing basic functionality for all JPhyloIO writers of XML formats.

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